I am building some depictions where I need to show some atom based
properties. My input structures are hydrogen complete and many
structures have H atoms amongst heavy atoms; my issue is I'd like to
avoid drawing hydrogens (depictions are often very cluttered because
of them), but if I remove them before the Compute2DCoords() call, I
lose the ability to correctly highlight the atoms referencing them by
index.

Is there any way to do what I need?

-- 
Gianluca Sforna

http://morefedora.blogspot.com
http://identi.ca/giallu - http://twitter.com/giallu

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