Hi there Kirk,
Your suggestion was interesting to tinker with -- but it doesn't help my
specific case.
If I set the environment to work with python 2.7 (and RDKit), I break ROCKs
functionality which I need from time to time.
I do not want to stay switching between p2.4 and p2.7 in the same session...
On 10 June 2011 19:20, Robert DeLisle <rkdeli...@gmail.com> wrote:
> I will defer to Greg's expertise for a more accurate answer, but I would
> suspect that the problem is the difference in using the system version of
> Python and a version of RDKit that is built with a newer version of GCC.
> You may be getting stuck in dependency confusion between the two versions.
>
> You should be able to build and install Python 2.7 without disturbing the
> system's Python 2.4.3.
>
> -Kirk
>
>
>
>
>
>
> On Fri, Jun 10, 2011 at 12:00 PM, JP <jeanpaul.ebe...@inhibox.com> wrote:
>
>> I am installing the brand new RDKit (2011_03_2) on CentOS (lol!) on a
>> Friday evening (6.54pm here in Oxford)... So I probably deserve the misery
>> of the following.
>>
>> I have already gone through the whole RDKit on Centos installation
>> procedure and pain on other machines and I now am undaunted by it. Bring it
>> on.
>> Still I installed everything (almost) according to the book (
>> http://code.google.com/p/rdkit/wiki/BuildingOnCentOS) with the exception
>> that I stuck to Python 2.4.3 (Python 2.7, doesn't play nicely with Rocks)
>>
>> And I get this anti-fancy error message
>>
>> >>> from rdkit import Chem
>> Traceback (most recent call last):
>> File "<stdin>", line 1, in ?
>> File "/share/apps/RDKit_2011_03_2/rdkit/Chem/__init__.py", line 18, in ?
>> from rdkit import rdBase
>> ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.9' not found
>> (required by /share/apps/RDKit_2011_03_2/rdkit/rdBase.so)
>>
>> Any ideas?
>>
>> [jp@xxx build]$ echo $LD_LIBRARY_PATH
>>
>> /share/apps/RDKit_2011_03_2/lib:/share/apps/boost_1_46_1/lib:/opt/gridengine/lib/lx26-amd64:/share/apps/openbabel/lib:/usr/local/lib:/share/apps/openbabel/lib:
>>
>> [jp@xxx build]$ echo $PYTHONPATH
>> :/share/apps/RDKit_2011_03_2
>>
>> [jp@xxx build]$ echo $RDBASE
>> /share/apps/RDKit_2011_03_2
>>
>> Any sympathy will be greatly appreciated.
>>
>> Cheers
>> JP
>>
>>
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