How appropriately timely, just saw this in my other console window:
[15:13:49] ERROR: on line 826803323 Cannot convert     to int

I think I will upgrade, right now.

RDKit - now munching >4GB files

Thanks!

-
Jean-Paul Ebejer
Early Stage Researcher



On 17 January 2012 14:55, Greg Landrum <[email protected]> wrote:
> Jean-Paul,
>
> On Tue, Jan 17, 2012 at 3:34 PM, JP <[email protected]> wrote:
>> I know this is not in the release notes so I shouldn't put my hopes
>> up, but just to be safe...
>> The ForwardXXXSupplier functionality didn't make the cut in this
>> release (2011.12.1), right?
>
> That's a bug in the release notes. :-)
>
> The ForwardSDMolSupplier is in the release (at least it should be):
>
> In [7]: import gzip
>
> In [8]: suppl =
> Chem.ForwardSDMolSupplier(gzip.open('hERG_inhibition_dataset.sdf.gz'))
>
> In [9]: ms = [x for x in suppl if x is not None]
>
> In [10]: len(ms)
> Out[10]: 242
>
> In [11]: from rdkit import rdBase
>
> In [12]: rdBase.rdkitVersion
> Out[12]: '2011.12.1'
>
>
> -greg

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