Dear Ryan, On Mon, Apr 2, 2012 at 10:42 PM, Long, Ryan L <[email protected]> wrote: > > My name is Ryan Long. I am a computer technician for one of the labs at > IUPUI. We have been trying to get rdkit running on a couple of our linux > systems (a Ubuntu 10.10 and a Red Hat system) and the install seems to go > ok, but when we run ctest we get at least 25 failures. Is this normal? > Should we be able to run the program despite these errors? Any help is > appreciated. Thanks!
The errors you are getting are all in the python tests. This is usually the result of either your PYTHONPATH or your LD_LIBRARY_PATH not being set properly. PYTHONPATH needs to include the directory that contains the "rdkit" directory and LD_LIBRARY_PATH needs to include the RDKit lib directory (or wherever those files were installed to). The easy test is to either do: ctest -V -R pyBV or: python -c "from rdkit import rdBase" and look at the output. If you see an error message that python cannot find the module rdkit it's a PYTHONPATH problem. Otherwise it's likely to be an LD_LIBRARY_PATH problem. Best, -greg ------------------------------------------------------------------------------ Better than sec? Nothing is better than sec when it comes to monitoring Big Data applications. Try Boundary one-second resolution app monitoring today. Free. http://p.sf.net/sfu/Boundary-dev2dev _______________________________________________ Rdkit-discuss mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
