Hi,
after struggling for some time to get the postgresql extension to RDKit
compiled, I now get another error whilst checking the installation:
> echo $RDBASE
/usr/local/src/RDKit_2011_12_1
> cd $RDBASE/Code/PgSQL/rdkit
> make installcheck
/usr/lib/postgresql/pgxs/src/makefiles/../../src/test/regress/pg_regress
--inputdir=. --psqldir="/usr/bin" --dbname=contrib_regression rdkit-pre91 props
btree molgist bfpgist-pre91 sfpgist slfpgist fps
(using postmaster on Unix socket, default port)
============== dropping database "contrib_regression" ==============
NOTICE: database "contrib_regression" does not exist, skipping
DROP DATABASE
============== creating database "contrib_regression" ==============
CREATE DATABASE
ALTER DATABASE
============== running regression test queries ==============
test rdkit-pre91 ... FAILED
test props ... FAILED
test btree ... FAILED
test molgist ... FAILED
test bfpgist-pre91 ... FAILED
test sfpgist ... FAILED
test slfpgist ... FAILED
test fps ... FAILED
======================
8 of 8 tests failed.
======================
The differences that caused some tests to fail can be viewed in the
file "/usr/local/src/RDKit_2011_12_1/Code/PgSQL/rdkit/regression.diffs". A
copy of the test summary that you see
above is saved in the file
"/usr/local/src/RDKit_2011_12_1/Code/PgSQL/rdkit/regression.out".
make: *** [installcheck] Error 1
Inspection of the
/usr/local/src/RDKit_2011_12_1/Code/PgSQL/rdkit/regression.diffs file learns
that a $libdir/rdkit file cannot be accessed (see below).
Also, the following shell-commands:
> createdb hans
> psql hans < /usr/local/src/RDKit_2011_12_1/Code/PgSQL/rdkit/rdkit.sql
return:
SET
ERROR: could not access file "$libdir/rdkit": No such file or directory
NOTICE: type "mol" is not yet defined
DETAIL: Creating a shell type definition.
....
.... (Skipping a large number of lines)
....
ERROR: could not access file "$libdir/rdkit": No such file or directory
ERROR: could not access file "$libdir/rdkit": No such file or directory
ERROR: type "sfp" does not exist
I guess the errors have to do with this $libdir variable, but how to set this
in pgsql and what should be the value of it?
Any help is GREATLY appreciated!
Hans
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