Hi Paolo,
Thanks a lot for the quick response and the tips.
My problem was actually tk and the lack of the $DISPLAY variable.
Now everything has passed.
See you next week!
George
On 25 September 2013 10:36, Paolo Tosco <[email protected]> wrote:
> Dear George,
>
> that test depends on the PIL Python module, which was not present in my
> Linux distro (Scientific Linux 6); once I installed it, the test ran fine.
>
> Regarding Ubuntu 13.04 and PIL, I just googled this thread:
> https://plus.google.com/112555004333838485342/posts/H8iRnbmdv7a
>
> Maybe this is your case too.
>
> Anyway, I suggest to try
>
> $ cd rdkit/Chem
> $ python test_list.py
>
> and see what is actually failing.
>
> HTH,
> Paolo
>
>
> On 09/25/2013 11:27 AM, George Papadatos wrote:
>
> Hello again,
> Sorry for the false alarm - that was me messing up with the env variables
> and not having enough coffee to realise it earlier!
> However, there is still one fail:
> *99% tests passed, 1 tests failed out of 79*
>
> Total Test time (real) = 88.37 sec
>
> The following tests FAILED:
> 79 - pythonTestDirChem (Failed)
> Errors while running CTest
>
> Do you have any ideas why that might be? Is it safe to ignore it?
>
> George
>
>
>
> On 25 September 2013 10:04, George Papadatos <[email protected]> wrote:
>
>> Hi there,
>> I tried to install RDKit on a fresh Ubuntu 13.04 VM today.
>> I checkout out the source from GitHub master but I got the following
>> errors after ctest:
>> 65% tests passed, 28 tests failed out of 79
>>
>> Total Test time (real) = 23.19 sec
>>
>> The following tests FAILED:
>> 4 - pyBV (Failed)
>> 5 - pyDiscreteValueVect (Failed)
>> 6 - pySparseIntVect (Failed)
>> 9 - testPyGeometry (Failed)
>> 12 - pyAlignment (Failed)
>> 17 - pyDistGeom (Failed)
>> 27 - pyDepictor (Failed)
>> 37 - pyChemReactions (Failed)
>> 42 - pyFragCatalog (Failed)
>> 44 - pyMolDescriptors (Failed)
>> 46 - pyPartialCharges (Failed)
>> 48 - pyMolTransforms (Failed)
>> 51 - pyForceFieldHelpers (Failed)
>> 53 - pyDistGeom (Failed)
>> 55 - pyMolAlign (Failed)
>> 57 - pyChemicalFeatures (Failed)
>> 59 - pyShapeHelpers (Failed)
>> 61 - pyMolCatalog (Failed)
>> 63 - pySLNParse (Failed)
>> 64 - pyGraphMolWrap (Failed)
>> 65 - pyTestConformerWrap (Failed)
>> 68 - pyMatCalc (Failed)
>> 69 - pyCMIM (Failed)
>> 70 - pyRanker (Failed)
>> 72 - pyFeatures (Failed)
>> 73 - pythonTestDbCLI (Failed)
>> 74 - pythonTestDirML (Failed)
>> 79 - pythonTestDirChem (Failed)
>> Errors while running CTest
>>
>> Any ideas why?
>>
>> Thanks in advance,
>>
>> George
>>
>>
>
>
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>
> --
> ==========================================================
> Paolo Tosco, Ph.D.
> Department of Drug Science and Technology
> Via Pietro Giuria, 9 - 10125 Torino (Italy)
> Tel: +39 011 670 7680 | Mob: +39 348 5537206
> Fax: +39 011 670 7687 | E-mail: [email protected]http://open3dqsar.org |
> http://open3dalign.org
> ==========================================================
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