Hi Nathan,
The temporary folder got deleted when the brew command exited. You can brew in
the debug mode instead:
brew install -v --debug --HEAD rdkit
When the error occurs, you will be left in a temporary shell. You can then
harvest the log file. Once you exit the temporary shell, the folder will get
deleted as usual.
Regards,
Eddie
On Oct 22, 2013, at 3:44 AM, Nathan Brown <nathan.br...@icr.ac.uk> wrote:
> Hi Greg,
>
> I would do, but the directory doesn't exist, strangely…
>
> Cheers, Nath
>
>
>
>
> From: greg landrum <greg.land...@gmail.com>
> Date: Monday, 21 October 2013 20:09
> To: Nathan Brown <nathan.br...@icr.ac.uk>
> Cc: "rdkit-discuss@lists.sourceforge.net"
> <rdkit-discuss@lists.sourceforge.net>
> Subject: Re: [Rdkit-discuss] Problems homebrewing RDKit
>
> Nath,
>
> Can you please send a copy of the output and error logs that are mentioned
> below?
>
> -greg
>
> On 21 Oct 2013, at 18:07, Nathan Brown <nathan.br...@icr.ac.uk> wrote:
>
>> Hi All,
>>
>> I'm having some trouble installing RDKit using Eddie's brew on my new
>> MacBook Pro. I've attached the reported errors below.
>>
>> Has anyone seen these before or have any idea how complete the installation?
>>
>> Cheers, Nath
>>
>> --------------------------------------------------------------------------------
>>
>> 104876CTHLT:Library nbrown$ brew doctor
>> Your system is ready to brew.
>> 104876CTHLT:Library nbrown$ brew install --HEAD rdkit
>> ==> Cloning https://github.com/rdkit/rdkit.git
>> Updating /Library/Caches/Homebrew/rdkit--git
>> ==> cmake -DCMAKE_INSTALL_PREFIX='/usr/local/Cellar/rdkit/HEAD'
>> -DCMAKE_BUILD_TYPE=None -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev
>> -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF
>> -DPYTHON_LIBRARY='/Syste
>> used as include directory in directory
>> /tmp/rdkit-oc3C/Code/ChemicalFeatures/Wrap
>>
>> -- Configuring incomplete, errors occurred!
>> See also "/tmp/rdkit-oc3C/CMakeFiles/CMakeOutput.log".
>> See also "/tmp/rdkit-oc3C/CMakeFiles/CMakeError.log".
>>
>> READ THIS: https://github.com/mxcl/homebrew/wiki/troubleshooting
>>
>> --------------------------------------------------------------------------------
>>
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> This e-mail message is confidential and for use by the addressee only. If the
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