Hi Greg: I’ve just placed two log files on http://fennario.ucsc.edu/~wgscott/temp/rdkit/
One was generated using the /usr/bin/g++ compiler on 10.9, i.e., zsh-% /usr/bin/g++ --version Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) Target: x86_64-apple-darwin13.0.0 Thread model: posix which seems to be the same as zsh-% /usr/bin/clang++ --version Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn) Target: x86_64-apple-darwin13.0.0 Thread model: posix The other one, which gets a bit further, was generated with fink’s g++ version 4.8 compiler in /sw/bin/g++, i.e., zsh-% /sw/bin/g++-4 --version g++-4 (GCC) 4.8.2 Copyright (C) 2013 Free Software Foundation, Inc. However, as a positive control, I just installed the most recently available compilers for 10.8, which still works fine to compile rdkit fennario-% /usr/bin/g++ --version Configured with: --prefix=/Applications/Xcode.app/Contents/Developer/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 5.0 (clang-500.2.76) (based on LLVM 3.3svn) Target: x86_64-apple-darwin12.5.0 Thread model: posix It looks almost the same as the one for 10.9, so I am even more stumped than before. Bill On Oct 25, 2013, at 11:23 AM, greg landrum <greg.land...@gmail.com> wrote: > Not an easy one. Since I don't have a Mac with 10.9 installed, I can't try it > out either. > > I have been able to build the rdkit with clang++ in the past without problems > and could certainly give that a try on a Linux box. Which version of clang > are you using? > > What are you seeing for error messages when you try a build? > > -greg > >> On 25 Oct 2013, at 18:43, "William G. Scott" <wgsc...@ucsc.edu> wrote: >> >> Dear RDkit community: >> >> I’ve been maintaining a fink package for RDkit (primarily as a dependency >> for coot). >> >> cf: http://tinyurl.com/rdkitfink >> >> It compiles and on OSX 10.6, 10.7 and 10.8, but not 10.9. (This includes >> the 2013_9 pre-release, FWIW.) >> >> With 10.9, the migration to clang++ is upon us, and I’m stuck. >> >> Has anyone succeeded in getting rdkit compiled on 10.9, and if so, how? >> >> Also, if anyone has feedback or recommendations for how to improve the fink >> rdkit package, please let me know. >> >> Thanks in advance. >> >> Bill Scott >> >> >> >> >> >> William G. Scott >> Professor >> Department of Chemistry and Biochemistry >> and The Center for the Molecular Biology of RNA >> 228 Sinsheimer Laboratories >> University of California at Santa Cruz >> Santa Cruz, California 95064 >> USA >> >> ------------------------------------------------------------------------------ >> October Webinars: Code for Performance >> Free Intel webinars can help you accelerate application performance. >> Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most >> from >> the latest Intel processors and coprocessors. See abstracts and register > >> http://pubads.g.doubleclick.net/gampad/clk?id=60135991&iu=/4140/ostg.clktrk >> _______________________________________________ >> Rdkit-discuss mailing list >> Rdkit-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss ------------------------------------------------------------------------------ October Webinars: Code for Performance Free Intel webinars can help you accelerate application performance. Explore tips for MPI, OpenMP, advanced profiling, and more. Get the most from the latest Intel processors and coprocessors. See abstracts and register > http://pubads.g.doubleclick.net/gampad/clk?id=60135991&iu=/4140/ostg.clktrk _______________________________________________ Rdkit-discuss mailing list Rdkit-discuss@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
