If you just want to ignore the error add a try...catch block around the
offending line.
Yours,
Toby Wright
On 31 May 2014 00:03, Matthew Lardy <mla...@gmail.com> wrote:
> Hi all,
>
> I am having this issue with the Java wrapper while trying to create a
> smiles string from a RWMol class object. I don't care about trying to
> figure out what is going wrong, I just want to bypass this record without
> my application closing. Any ideas?
>
> Here is the offending line:
>
> rdmol.MolToSmiles();
>
> The error:
>
> Exception in thread "main" org.RDKit.MolSanitizeException
> at org.RDKit.RDKFuncsJNI.RWMol_MolFromSmiles__SWIG_3(Native Method)
> at org.RDKit.RWMol.MolFromSmiles(RWMol.java:422)
>
> Thanks in advance!
> Matt
>
>
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