Hi Greg and Matthew,
I am still having issues (which seems to still be boost related). The
following is my error:
[ 97%] Built target testChemicalFeatures
[ 97%] Built target rdChemicalFeatures
[ 97%] Swig source
/usr/local/include/boost/smart_ptr/shared_array.hpp:65: Error: Syntax error in
input(3).
make[2]: *** [Code/JavaWrappers/gmwrapper/GraphMolJavaJAVA_wrap.cxx] Error 1
make[1]: *** [Code/JavaWrappers/gmwrapper/CMakeFiles/GraphMolWrap.dir/all]
Error 2
make: *** [all] Error 2
I am using: SWIG 2.0.10, boost 1.55, cmake 2.8.12.2
Thank you in advance,
Mattie
________________________________
From: Matthew Lardy [[email protected]]
Sent: Wednesday, September 10, 2014 12:05 AM
To: Whitmore, Mattie [USA]
Cc: [email protected]
Subject: [External] Re: [Rdkit-discuss] java wrapper problem on CentOS 6.5
Hi Mattie,
I would also caution you that the version of CMake appears to be very
important. Previously, I have had no issues building the wrappers using Cmake
(v. 2.8.10.2), Boost (v.1.55), and Swig (2.0.10) on CentOS 6.4-6.5. It took me
a long time to figure that out.
Hopefully that is helpful!
Matthew
On Tue, Sep 9, 2014 at 3:13 PM, Whitmore, Mattie [USA]
<[email protected]<mailto:[email protected]>> wrote:
Dear All,
I am building RDKit with java wrappers using the following code:
cmake -D BOOST_ROOT=/usr/local -D
PYTHON_LIBRARY=/usr/local/lib/python2.7/config/libpython2.7.a -D
PYTHON_INCLUDE_PATH=/usr/local/include/python2.7/ -D
PYTHON_EXECUTABLE=/usr/local/bin/python2.7 -D RDK_BUILD_SWIG_WRAPPERS=ON ..
and I am getting the error:
make[2]: *** [Code/JavaWrappers/gmwrapper/GraphMolJavaJAVA_wrap.cxx] Error 1
make[1]: *** [Code/JavaWrappers/gmwrapper/CMakeFiles/GraphMolWrap.dir/all]
Error 2
make: *** [all] Error 2
I noticed others getting this error as well, so I'm trying to upgrade to boost
1.46.1 I realize this is not exactally the correct mailing list for this, but I
am still running into issues with the proper make commands. I have run
./bootstrap.sh -with-libraries=python -with-python=Python2.7 -with-toolset=gcc
./bjam -a --layout=tagged -q
libs/python/src/numeric.cpp:22: warning:
‘boost::python::numeric::<unnamed>::array_module’ defined but not used
"g++" -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall
-pthread -DBOOST_ALL_NO_LIB=1 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_STATIC_LIB
-DNDEBUG -I"." -I"/usr/include/python2.6" -c -o
"bin.v2/libs/python/build/gcc-4.4.7/release/link-static/threading-multi/numeric.o"
"libs/python/src/numeric.cpp"
...failed gcc.compile.c++
bin.v2/libs/python/build/gcc-4.4.7/release/link-static/threading-multi/numeric.o...
...failed updating 1 target...
Does anyone have suggestions on building boost with python libraries?
Thanks in advance
Mattie
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