I've implemented a suite of rdkit functions
for postgres using plpython
https://github.com/tjod/rdchord
and the overhead is minimal
since most of the heavy lifting of substructure searching
is done by rdkit.
I think the same would be true of oracle.
-------------------
TJ O'Donnell
On Thu, Mar 12, 2015 at 4:24 PM, Michal Krompiec <[email protected]>
wrote:
> Hello, has anybody tried to implement substructure searching in an Oracle
> database using PYPL and RDKit? Is it just a matter of writing a wrapper
> function for molecule.HasSubstructMatch(pattern) or is the overhead of
> calling pypl each time too costly timewise? Do consecutive pypl calls
> always share the same interpreter?
> Best wishes,
> Michal
>
>
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