Dear All,
I have just built revision 5775 on Windows, and the pyGraphMolWrap test fails.
The relevant bit of the verbose output is below:
78: ERROR: testGithub498 (__main__.TestCase)
78: ----------------------------------------------------------------------
78: Traceback (most recent call last):
78: File "C:/RDKit/Code/GraphMol/Wrap/rough_test.py", line 3033, in
testGithub498
78: outf = gzip.open(tempfile.mktemp(),'wt+')
78: File "C:\Anaconda\lib\gzip.py", line 34, in open
78: return GzipFile(filename, mode, compresslevel)
78: File "C:\Anaconda\lib\gzip.py", line 94, in __init__
78: fileobj = self.myfileobj = __builtin__.open(filename, mode or 'rb')
78: ValueError: Invalid mode ('wt+b')
This seems to be due to a difference in python/gzip behaviour on Windows vs. eg
Linux:
On Ubuntu (Anaconda python):
In [1]: import tempfile, gzip
In [2]: outf = gzip.open(tempfile.mktemp(), 'wt+')
In [3]:
On Windows (again Anaconda python):
In [1]: import tempfile, gzip
In [2]: outf = gzip.open(tempfile.mktemp(), 'wt+')
---------------------------------------------------------------------------
ValueError Traceback (most recent call last)
<ipython-input-2-6bee12287576> in <module>()
----> 1 outf = gzip.open(tempfile.mktemp(), 'wt+')
C:\Anaconda\lib\gzip.pyc in open(filename, mode, compresslevel)
32
33 """
---> 34 return GzipFile(filename, mode, compresslevel)
35
36 class GzipFile(io.BufferedIOBase):
C:\Anaconda\lib\gzip.pyc in __init__(self, filename, mode, compresslevel,
fileobj, mtime)
92 mode += 'b'
93 if fileobj is None:
---> 94 fileobj = self.myfileobj = __builtin__.open(filename, mode
or 'rb')
95 if filename is None:
96 # Issue #13781: os.fdopen() creates a fileobj with a bogus
name
ValueError: Invalid mode ('wt+b')
In [3]:
Is this an easy one to fix?
Kind regards
James
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