Hello David,
it shows:
>>> import os
>>> os.environ["PYTHONPATH"]
Traceback (most recent call last):
File "<pyshell#4>", line 1, in <module>
os.environ["PYTHONPATH"]
File "/usr/lib/python2.7/UserDict.py", line 40, in __getitem__
raise KeyError(key)
KeyError: 'PYTHONPATH'
And Paolo gave me yesterday the hint to add the following:
import sys
sys.path.append('/opt/rdkit-Release_2016_03_1')
but then I get the following error:
>>> import sys
>>> sys.path.append('/opt/rdkit-Release_2016_03_1')
>>> from rdkit import Chem
Traceback (most recent call last):
File "<pyshell#7>", line 1, in <module>
from rdkit import Chem
File "/opt/rdkit-Release_2016_03_1/rdkit/Chem/__init__.py", line 18,
in <module>
from rdkit import rdBase
ImportError: libRDBoost.so.1: cannot open shared object file: No such
file or directory
But in Terminal and IPython console/notebook everything works fine. I
don't know what exactly is set wrong or installed wrong.
On 19.07.2016 18:42, David Hall wrote:
> what does os.environ["PYTHONPATH”] show when you are in IDLE?
>
>
>> On Jul 19, 2016, at 12:26 PM, Jessica Krause <[email protected]> wrote:
>>
>> Dear All,
>>
>> I installed the new release of Rdkit in Ubunutu 16.04. I am not able to
>> import rdkit module in my IDLE and Spyder after installing the new
>> release 2016.
>> It works in terminal and Ipython Notebook but shows error in IDLE and
>> Spyder.
>>
>> In Terminal:
>>
>> Python 2.7.12 (default, Jul 1 2016, 15:12:24)
>> [GCC 5.4.0 20160609] on linux2
>> Type "help", "copyright", "credits" or "license" for more information.
>>>>> from rdkit import rdBase
>>>>> print rdBase.rdkitVersion
>> 2016.03.1
>>>>> import os
>>>>> os.environ["PYTHONPATH"]
>> '/opt/rdkit-Release_2016_03_1:'
>> In IDLE/Spyder:
>>
>> Python 2.7.12 (default, Jul 1 2016, 15:12:24)
>> [GCC 5.4.0 20160609] on linux2
>> Type "copyright", "credits" or "license()" for more information.
>>>>> from rdkit import rdBase
>> Traceback (most recent call last):
>> File "<pyshell#0>", line 1, in <module>
>> from rdkit import rdBase
>> ImportError: No module named rdkit
>>
>> Can somebody help me with this!
>>
>>
>> Thanks & Regards,
>>
>> Jessica
>>
>>
>> ------------------------------------------------------------------------------
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What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic
patterns at an interface-level. Reveals which users, apps, and protocols are
consuming the most bandwidth. Provides multi-vendor support for NetFlow,
J-Flow, sFlow and other flows. Make informed decisions using capacity planning
reports.http://sdm.link/zohodev2dev
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