On 03/07/2017 05:42 PM, Markus Metz wrote: > Dear Stephane: > Thank you very much. > I will give it a try.
An alternative:
import os
import sys
import time
import threading
PYMOL_PATH = "/SOME/PLACE/lib64/python"
sys.path.append( PYMOL_PATH )
import pymol
def make_image( infile, outfile ) :
pymol.pymol_argv = ['pymol','-qc']
pymol.finish_launching()
cmd = pymol.cmd
cmd.load( infile )
cmd.hide( "everything" )
cmd.show( "sticks" )
cmd.util.cbaw()
cmd.set( "cartoon_discrete_colors", 1 )
cmd.set( "ray_opaque_background", "off" )
cmd.set( "ray_trace_mode", 1 )
cmd.set( "antialias", 2 )
cmd.set( "ray_trace_color", "grey" )
cmd.set( "cartoon_fancy_helices", 1 )
cmd.set( "cartoon_side_chain_helper", "on" )
cmd.png( outfile, width = 800, dpi = 300, ray = 1 )
while threading.active_count() > 2 :
time.sleep( 2 )
cmd.quit()
HTH,
--
Dimitri Maziuk
Programmer/sysadmin
BioMagResBank, UW-Madison -- http://www.bmrb.wisc.edu
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