Hi Greg,
Thank you for a quick response; it worked, both for RDKit, and for JRgui
program I wrote (that used RDKit).
The error message seems a bit odd, but good to know a way to get around it.
Best,
Chenyang
On Fri, Oct 27, 2017 at 10:54 PM, Greg Landrum <greg.land...@gmail.com>
wrote:
> Hi Chenyang,
>
> This looks like the breakage caused by conda v4.3.27. There's some more
> information here:
> https://www.mail-archive.com/rdkit-discuss@lists.
> sourceforge.net/msg07325.html
>
> Best,
> -greg
>
>
> On Sat, Oct 28, 2017 at 5:27 AM, Chenyang Shi <cs3...@columbia.edu> wrote:
>
>> Hi Everyone,
>>
>> I am writing to report a possible bug in RDKit on mac.
>> I have a program that uses Chem from rdkit. The program works fine in
>> Linux and Windows systems. However, I had hard time on macOS. I think I
>> might be doing something wrong myself before I did a test on a clean macOS
>> system on someone else's mac (10.12.4 Sierra; mine is 10.10.3 Yosemite). On
>> Sierra computer, I downloaded anaconda, installed it, and conda install
>> rdkit as instructed. After I source activate my-rkdit-env, it failed to
>> execute my program jrgui.py. I then import rdkit it worked fine; however,
>> if I type from rdkit import Chem, it reports error segmentation fault 11.
>>
>> All these are screen captured, and attached in the email. I am not sure
>> if this is a bug or something else. Do you have a hint what's going bad?
>>
>> Thanks,
>> Chenyang
>>
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