Taka diagnosed this correctly. Here's the issue: https://github.com/rdkit/rdkit/issues/2380
It will be fixed in the next release. Thanks for pointing it out! -greg On Fri, Mar 29, 2019 at 6:19 AM Taka Seri <serit...@gmail.com> wrote: > Hi Diallo, > > I could reproduce it. It seems MolsToGridimage method throws error when > the function get pandas Series and useSVG=True. > I can get svg image when I converted the series to list. Like the below. > > df is Data frame which has rdkit mol object. > > from IPython.display import SVG > im=Draw.MolsToGridImage(df.ROMol.tolist(), useSVG=True) > SVG(im) > > I hope this would help you. > Best, > > Taka > > 2019年3月23日(土) 0:02 Bakary N'tji Diallo <diallobaka...@gmail.com>: > >> It is possible to draw high-quality image for a set of compounds. >> I am trying to use the panda tool using the FrameToGridImage function. >> >> rdkit.Chem.PandasTools.FrameToGridImage(frame, column=’ROMol’, >> legendsCol=None, **kwargs) >> >> But using it with the “useSVG=True” keyword is throwing an error. >> >> rdkit.Chem.PandasTools.FrameToGridImage(frame, column=’ROMol’, >> legendsCol=None,useSVG=True) >> >> -- >> >> Bakary N’tji DIALLO >> >> PhD Student (Bioinformatics) <http://linkedin.com/in/bakarydiallo>, Research >> Unit in Bioinformatics (RUBi) <https://rubi.ru.ac.za/> >> >> Mail: diallobaka...@gmail.com | Skype: diallobakary4 >> >> Tel: +27798233845 | +223 74 56 57 22 | +223 97 39 77 14 >> >> _______________________________________________ >> Rdkit-discuss mailing list >> Rdkit-discuss@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >> > _______________________________________________ > Rdkit-discuss mailing list > Rdkit-discuss@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/rdkit-discuss >
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