Dear all,
I am trying to build the RDKit C# wrapper but I am having issues due to the
build not finding certain boost libraries (boost_system, boost_iostreams and
boost_python). I have tried solving the error by installing boost in different
locations; through anaconda and also by installing boost separately but I get
the error for both instances. I have also set the 3 environment variables;
BOOST_INCLUDEDIR, BOOST_ROOT, BOOST_LIBRARYDIR, but CMake ignores the variables
no matter what they are set to.
The error is reproducible for me with the following code:
set RDBASE=C:\Users\e.barlow-smith\AppData\Local\RDKit
set BOOST_ROOT=C:\Users\e.barlow-smith\AppData\Local\boost_1_67_0\boost
cd %RDBASE%
conda activate my-rdkit-env
cmake -S %RDBASE% -B "%RDBASE%\build" -DRDK_BUILD_SWIG_CSHARP_WRAPPER=ON
My configuration:
OS: Windows: 10.0.17
Rdkit: 2019.03.01
Python: 3.7.3
CMake: 3.14
Conda: 4.6.11
swig: 3.0.12
Error message:
-- Found Catch2 source in
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/catch/catch
CATCH:
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/catch/catch/single_include
CMake Warning (dev) at CMakeLists.txt:246 (find_package):
Policy CMP0074 is not set: find_package uses <PackageName>_ROOT variables.
Run "cmake --help-policy CMP0074" for policy details. Use the cmake_policy
command to set the policy and suppress this warning.
Environment variable Boost_ROOT is set to:
C:\Users\e.barlow-smith\AppData\Local\boost_1_67_0\boost
For compatibility, CMake is ignoring the variable.
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning at
C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/FindBoost.cmake:1799
(message):
No header defined for python-py37; skipping header check
Call Stack (most recent call first):
CMakeLists.txt:246 (find_package)
CMake Error at
C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/FindBoost.cmake:2132
(message):
Unable to find the requested Boost libraries.
Boost version: 1.67.0
Boost include path:
C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/include
Could not find the following Boost libraries:
boost_python
No Boost libraries were found. You may need to set BOOST_LIBRARYDIR to the
directory containing Boost libraries or BOOST_ROOT to the location of
Boost.
Call Stack (most recent call first):
CMakeLists.txt:254 (find_package)
-- Could NOT find Boost
== Using strict rotor definition
-- maeparser include dir set as
'C:/Users/e.barlow-smith/AppData/Local/RDKit/External/CoordGen'
-- maeparser libraries set as
'C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/lib/maeparser.lib'
-- Found maeparser:
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/CoordGen
-- coordgen include dir set as
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/CoordGen
-- coordgen libraries set as
'C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/lib/coordgen.lib'
-- coordgen templates file set as 'coordgen_TEMPLATE_FILE-NOTFOUND'
-- Could NOT find coordgen (missing: coordgen_TEMPLATE_FILE)
-- Found coordgenlibs source in
C:/Users/e.barlow-smith/AppData/Local/RDKit/External/CoordGen/coordgen
Could not find the following Boost libraries:
boost_system
boost_iostreams
Some (but not all) of the required Boost libraries were found. You may
need to install these additional Boost libraries. Alternatively, set
BOOST_LIBRARYDIR to the directory containing Boost libraries or BOOST_ROOT
to the location of Boost.
Call Stack (most recent call first):
Code/RDStreams/CMakeLists.txt:1 (find_package)
-- Could NOT find Boost
CMake Warning (dev) at Code/GraphMol/FileParsers/CMakeLists.txt:6
(find_package):
CMake Error at
C:/Users/e.barlow-smith/AppData/Local/Continuum/anaconda3/envs/my-rdkit-env/Library/share/cmake-3.14/Modules/FindBoost.cmake:2132
(message):
Unable to find the requested Boost libraries.
-- Could NOT find Boost
== Making EnumerateLibrary without boost Serialization support
== Making FilterCatalog without boost Serialization support
== Updating Filters.cpp from pains file
== Done updating pains files
== Making SubstructLibrary without boost Serialization support
-- Found RapidJSON source in
C:/Users/e.barlow-smith/AppData/Local/RDKit/External
-- Configuring incomplete, errors occurred!
See also
"C:/Users/e.barlow-smith/AppData/Local/RDKit/build/CMakeFiles/CMakeOutput.log".
See also
"C:/Users/e.barlow-smith/AppData/Local/RDKit/build/CMakeFiles/CMakeError.log".
Thanks in advance,
Esther
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