Hello everyone,

I see that GetBondDistance() is a useful tool for calculating the distances 
between atoms, whether bonded or nonbonded. However, I am unsure on how to 
implement this function to calculate distances between atoms in different 
molecule, as the functions requires a conformer as an argument.


Would I need to generate a conformer containing both molecules in order to use 
this function for calculating the intermolecular atom distances?


Illimar Rekand
Ph.D. candidate,
Brenk-lab, Haug-lab
Department of Biomedicine
Department of Chemistry
University of Bergen



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