Yes, that did the trick. Thanks.
On 30/03/2020 15:05, Paolo Tosco wrote:
Hi Tim,
try rm -rf External/CoordGen/coordgen* External/CoordGen/maeparser*
you might have some outdated coordgen libs. Deleting those and
re-running cmake will download them afresh.
Cheers,
p.
On 30/03/2020 14:51, Tim Dudgeon wrote:
I'm finding an error building from source (on master branch).
Any ideas?
cmake -DPYTHON_EXECUTABLE=/usr/bin/python3
-DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON
-DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_BUILD_SWIG_WRAPPERS=ON ..
make -j 8
[ 66%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TplFileParser.cpp.o
[ 66%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o
[ 67%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBParser.cpp.o
[ 67%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBWriter.cpp.o
[ 67%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBSupplier.cpp.o
[ 67%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/XYZFileWriter.cpp.o
[ 67%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MaeMolSupplier.cpp.o
[ 67%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/ProximityBonds.cpp.o
[ 67%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SequenceParsers.cpp.o
[ 67%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SequenceWriters.cpp.o
[ 67%] Building CXX object
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SVGParser.cpp.o
/home/timbo/github/rdkit/rdkit/Code/GraphMol/FileParsers/MaeMolSupplier.cpp:
In function ‘void
RDKit::{anonymous}::set_mol_properties(RDKit::RWMol&, const
schrodinger::mae::Block&)’:
/home/timbo/github/rdkit/rdkit/Code/GraphMol/FileParsers/MaeMolSupplier.cpp:214:37:
error: ‘CT_CHIRALITY_PROP_PREFIX’ is not a member of ‘schrodinger::mae’
214 | } else if
(prop.first.find(mae::CT_CHIRALITY_PROP_PREFIX) == 0 ||
| ^~~~~~~~~~~~~~~~~~~~~~~~
/home/timbo/github/rdkit/rdkit/Code/GraphMol/FileParsers/MaeMolSupplier.cpp:215:37:
error: ‘CT_PSEUDOCHIRALITY_PROP_PREFIX’ is not a member of
‘schrodinger::mae’
215 | prop.first.find(mae::CT_PSEUDOCHIRALITY_PROP_PREFIX) == 0) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/timbo/github/rdkit/rdkit/Code/GraphMol/FileParsers/MaeMolSupplier.cpp:217:37:
error: ‘CT_EZ_PROP_PREFIX’ is not a member of ‘schrodinger::mae’
217 | } else if (prop.first.find(mae::CT_EZ_PROP_PREFIX) == 0) {
| ^~~~~~~~~~~~~~~~~
make[2]: ***
[Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/build.make:310:
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MaeMolSupplier.cpp.o]
Error 1
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/Makefile2:7238:
Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/all]
Error 2
make: *** [Makefile:163: all] Error 2
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