Hi I'm trying to calculate the RMSD between conformers of the same molecules stores in separate mol file. I figured out a way:
m1= Chem.FromMolFile('1.mol')
m2= Chem.FromMolFile('2.mol')
m1.AddConformer(M2.GetConformer(-1),1)
AllChem.GetConformerRMS(m1,0,1)
Is there another way??
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