I don't believe that it is possible. You have to run your script from within
the environment where you installed rdkit.
What I actually do is to have a work environment, and then install all the
packages I need in this same env.
--
Gustavo Seabra
________________________________
From: Jeff Saxon <jmsstarli...@gmail.com>
Sent: Wednesday, December 2, 2020 6:48:47 AM
To: rdkit-discuss@lists.sourceforge.net <rdkit-discuss@lists.sourceforge.net>
Subject: [Rdkit-discuss] activate my-rdkit-env from python script
Dear All,
Since I installed RDKIT using conda, I have to use the following
command from my bash terminal to activate the RDKIT environment:
conda activate my-rdkit-env
How can I do the same but inside my python script?
I have already tried to call subprocess, but it did not work
# source environment from python script;
subprocess.run('conda init bash', shell=True)
subprocess.run('conda activate my-rdkit-env', shell=True)
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