Dear Ling,

Yes, the atom indexing is the same for all conformers of a molecule.

Best regards,
Sereina



> On 19 Jun 2022, at 00:04, Ling Chan <lingtrek...@gmail.com> wrote:
> 
> Dear colleagues,
> 
> Just wonder if the atom indexing in a conformer is always identical to that 
> of the parent molecule? I suspect it is but would like to confirm.
> 
> Specifically, I would like to confirm that
>   for conf in mol.GetConformers():
>     conf.GetAtomPosition(idx)
> always corresponds to the atom
>   mol.GetAtomWithIdx(idx)
> 
> Thank you.
> 
> Ling
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