Hello,
I am trying to edit a large amount of mol files. It happens that the mol files
are not readable. These broken files should simply be skipped and the program
should continue to run.
With a try / except this does not seem to be solvable in the rdkit:
from rdkit import Chem
filename = 'C:\\Strukturen\\ProblemMOLs\\99.mol'
try:
mol = Chem.MolFromMolFile(filename)
except:
mol = 'Problem File'
print(mol)
A nonsense MOL file shows a (correct) error message on the console and the
program is interrupted. Here for example:" [16:06:52]None Cannot convert 'jus'
to unsigned int on line 4".
I don't want an error message on the console but that the program runs into the
except block. I am grateful for any tip.
Thanks, Ruediger Lang
99.mol:
This is not a mol-file
this is not a mol-file
I am not a mol-file
just something
with numbers
8879 96874 65-sdf
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