Author: bugman
Date: Fri Jan 30 11:57:38 2015
New Revision: 27386
URL: http://svn.gna.org/viewcvs/relax?rev=27386&view=rev
Log:
Code rearrangement in the _data_store.test_seq_align unit test module.
The ID generation has been shifted into the generate_ids() method to be used by
multiple tests.
Modified:
trunk/test_suite/unit_tests/_data_store/test_seq_align.py
Modified: trunk/test_suite/unit_tests/_data_store/test_seq_align.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/unit_tests/_data_store/test_seq_align.py?rev=27386&r1=27385&r2=27386&view=diff
==============================================================================
--- trunk/test_suite/unit_tests/_data_store/test_seq_align.py (original)
+++ trunk/test_suite/unit_tests/_data_store/test_seq_align.py Fri Jan 30
11:57:38 2015
@@ -34,6 +34,21 @@
"""Set 'self.seq_align' to an empty instance of the
Sequence_alignments class."""
self.seq_align = Sequence_alignments()
+
+
+ def generate_ids(self, object_ids, models, molecules):
+ """Generate the expected IDs."""
+
+ # Generate the IDs.
+ ids = []
+ for i in range(len(object_ids)):
+ ids.append("Object '%s'" % object_ids[i])
+ if models[i] != None:
+ ids[-1] += "; Model %i" % models[i]
+ ids[-1] += "; Molecule '%s'" % molecules[i]
+
+ # Return the IDs.
+ return ids
def return_align_data(self):
@@ -106,12 +121,7 @@
self.seq_align.add(object_ids=object_ids, models=models,
molecules=molecules, sequences=sequences, strings=strings, gaps=gaps,
msa_algorithm=msa_algorithm, pairwise_algorithm=pairwise_algorithm,
matrix=matrix, gap_open_penalty=gap_open_penalty,
gap_extend_penalty=gap_extend_penalty,
end_gap_open_penalty=end_gap_open_penalty,
end_gap_extend_penalty=end_gap_extend_penalty)
# Generate the expected IDs.
- ids = []
- for i in range(len(object_ids)):
- ids.append("Object '%s'" % object_ids[i])
- if models[i] != None:
- ids[-1] += "; Model %i" % models[i]
- ids[-1] += "; Molecule '%s'" % molecules[i]
+ ids = self.generate_ids(object_ids, models, molecules)
# Check the data.
for i in range(8):
@@ -147,6 +157,9 @@
# Check that something was returned.
self.assertNotEqual(align, None)
+ # Generate the expected IDs.
+ ids = self.generate_ids(object_ids, models, molecules)
+
# Check some of the data.
for i in range(8):
print("Checking \"%s\"" % ids[i])
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