Author: bugman
Date: Fri Jan 30 14:46:12 2015
New Revision: 27391
URL: http://svn.gna.org/viewcvs/relax?rev=27391&view=rev
Log:
Modified the Structure.test_sequence_alignment_molecules system test.
Changed and expanded the arguments to the yet to be implemented
structure.sequence_alignment user
function.
Modified:
trunk/test_suite/system_tests/structure.py
Modified: trunk/test_suite/system_tests/structure.py
URL:
http://svn.gna.org/viewcvs/relax/trunk/test_suite/system_tests/structure.py?rev=27391&r1=27390&r2=27391&view=diff
==============================================================================
--- trunk/test_suite/system_tests/structure.py (original)
+++ trunk/test_suite/system_tests/structure.py Fri Jan 30 14:46:12 2015
@@ -4654,7 +4654,7 @@
self.interpreter.structure.read_pdb('1J7P_1st_NH_rot.pdb', dir=path,
set_model_num=1, set_mol_name='CaM B')
# Perform the alignment.
- self.interpreter.structure.sequence_alignment(msa_algorithm='Central
Star', algorithm='NW70', matrix='BLOSUM62', gap_open_penalty=10.0,
gap_extend_penalty=1.0, end_gap_open_penalty=0.5, end_gap_extend_penalty=0.1)
+ self.interpreter.structure.sequence_alignment(pipes=['mf'],
models=[[1, 1]], molecules=[['CaM A', 'CaM B']], msa_algorithm='Central Star',
pairwise_algorithm='NW70', matrix='BLOSUM62', gap_open_penalty=10.0,
gap_extend_penalty=1.0, end_gap_open_penalty=0.5, end_gap_extend_penalty=0.1)
# Save the relax state.
self.tmpfile = mktemp()
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