Author: bugman Date: Fri Feb 20 11:49:46 2015 New Revision: 27693 URL: http://svn.gna.org/viewcvs/relax?rev=27693&view=rev Log: Merged revisions 27690-27692 via svnmerge from svn+ssh://bug...@svn.gna.org/svn/relax/trunk
........ r27690 | bugman | 2015-02-20 10:07:31 +0100 (Fri, 20 Feb 2015) | 7 lines Improved the RelaxWarning for missing atom numbers in the PDB CONECT records. This is for the structure.read_pdb user function. Now only one warning is given for the entire PDB file listing all of the missing atom numbers rather than one warning per missing atom. This can significantly compact the warnings, removing a lot of repetition. ........ r27691 | bugman | 2015-02-20 10:23:44 +0100 (Fri, 20 Feb 2015) | 8 lines Improved the quality of the printouts from the structure.read_pdb user function. This also affects the structure.read_gaussian and structure.read_xyz user functions. The messages about adding new molecules or merging with existing molecules has been significantly improved. The text with the model information is now only printed if the model number is present in the PDB file or has been supplied by the user. ........ r27692 | bugman | 2015-02-20 11:26:56 +0100 (Fri, 20 Feb 2015) | 10 lines Fixes for all of the PDB documentation HTML links in the docstrings. The PDB have shifted their documentation from http://www.wwpdb.org/documentation/format33/v3.3.html to http://www.wwpdb.org/documentation/file-format/format33/v3.3.html, stupidly without redirects. This will create dead links in the relax API documentation at http://www.nmr-relax.com/api/3.3/, as well as the older API documentation (http://www.nmr-relax.com/api/2.2/, http://www.nmr-relax.com/api/3.0/, http://www.nmr-relax.com/api/3.1/, http://www.nmr-relax.com/api/3.2/). ........ Modified: branches/nmrglue/ (props changed) branches/nmrglue/lib/structure/internal/molecules.py branches/nmrglue/lib/structure/internal/object.py branches/nmrglue/lib/structure/pdb_read.py branches/nmrglue/lib/structure/pdb_write.py [This mail would be too long, it was shortened to contain the URLs only.] Modified: branches/nmrglue/lib/structure/internal/molecules.py URL: http://svn.gna.org/viewcvs/relax/branches/nmrglue/lib/structure/internal/molecules.py?rev=27693&r1=27692&r2=27693&view=diff Modified: branches/nmrglue/lib/structure/internal/object.py URL: http://svn.gna.org/viewcvs/relax/branches/nmrglue/lib/structure/internal/object.py?rev=27693&r1=27692&r2=27693&view=diff Modified: branches/nmrglue/lib/structure/pdb_read.py URL: http://svn.gna.org/viewcvs/relax/branches/nmrglue/lib/structure/pdb_read.py?rev=27693&r1=27692&r2=27693&view=diff Modified: branches/nmrglue/lib/structure/pdb_write.py URL: http://svn.gna.org/viewcvs/relax/branches/nmrglue/lib/structure/pdb_write.py?rev=27693&r1=27692&r2=27693&view=diff _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-commits mailing list relax-commits@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-commits
