On Tue, Apr 8, 2008 at 1:30 PM, Sébastien Morin
<[EMAIL PROTECTED]> wrote:
>
>  Hi Ed,
>
>  These news concerning the minimization of model "m0" are reassuring. I
> agree with you that keeping this behaviour is better than trying to change
> it and potentially introducing bugs... However, I would agree if a small
> change would be made so the error message says the user that, in this
> special case of "m0", the error is normal.

This would be useful, but would be hard to introduce.  Maybe a
RelaxWarning in the model-free minimise() method would be the best,
when the param_vector array is of length 0?  But the minimise() method
must be fully executed to get the final statistics, specifically the
chi-squared value.


>  Also, and more concerning, is the apparent break in the monte carlo
> simulations... Please see the second message in the bug report (11454) where
> I explain that the log file for any given simulation stops after
> encountering the "m0" problem even though the results file seems to contain
> the simulations results for every residue... This is quite strange and I'm
> afraid that the simulations might be affected... Do you think that the
> simulations for residues after the "m0" problem will be fine ? If so, why
> isn't there anything in the logs concerning residues following the first
> "m0" problem..?

As for this break, I'm not sure what is happening.  I don't know if
this is related, so this will require a bit of investigation.  The m0
simulations should be fine, but the break is still a bit of a worry.
For models other than m0, these are in different runs, so should not
be affected by what happened with m0 (note the should, there is a
possibility that it is).

Regards,

Edward

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