That is a stranger error.  It looks like it cannot find swig on the
$PATH environmental variable!  Weird.  For that problem, try adding
the directory with swig to the PATH variable with:

bash gre:scipy-0.12.0 $ PATH=/opt/local/bin/:/usr/local/bin/:$PATH
C_INCLUDE_PATH=/sw/include/ suitesparse/ ~/bin/python2.7 setup.py
install

Let's see if that helps the scipy setup along a little ;)

Regards,

Edward



On 11 August 2013 07:20, Paul Schanda <[email protected]> wrote:
> Well, there is possibly some progress. I have to admit that I have no clue
> what fat3 commands and swig exactly do, though.
>
> The following seemed to work (or at least not produce any error message):
>
> bash-3.2$ pwd
> /Users/paul/Downloads/scipy-0.12.0
> bash-3.2$ /opt/local/bin/swig -I/sw/include/suitesparse/
> -I/opt/local/include -python -o
> build/src.macosx-10.6-intel-2.7/scipy/sparse/linalg/dsolve/umfpack/_umfpack_wrap.c
> -outdir build/src.macosx-10.6-intel-2.7/scipy/sparse/linalg/dsolve/umfpack
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i
> bash-3.2$
>
> However, this does not really solve the swig problem when installing scipy.
> I guess there is still some problem with the path.
> (Note that I slightly modified your command, that you suggested:
>
> [gre:~/Downloads/scipy-0.12.0] % bash
> gre:scipy-0.12.0 $ PATH=/usr/local/bin/:$PATH
> C_INCLUDE_PATH=/sw/include/
> suitesparse/ ~/bin/python2.7 setup.py
> install
>
> as my pythone2.7 is somewhere else)
>
> Here is what I get.
>
>
> bash-3.2$ PATH=/usr/local/bin/:$PATH C_INCLUDE_PATH=/sw/include/suitesparse
> /usr/bin/python2.7 setup.py install
>
> Running from scipy source directory.
>
> blas_opt_info:
>
>   FOUND:
>
>     extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
>
>     define_macros = [('NO_ATLAS_INFO', 3)]
>
>     extra_compile_args = ['-msse3',
> '-I/System/Library/Frameworks/vecLib.framework/Headers']
>
> lapack_opt_info:
>
>   FOUND:
>
>     extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
>
>     define_macros = [('NO_ATLAS_INFO', 3)]
>
>     extra_compile_args = ['-msse3']
>
> umfpack_info:
>
>   libraries umfpack not found in
> /System/Library/Frameworks/Python.framework/Versions/2.7/lib
>
>   libraries umfpack not found in /usr/local/lib
>
>   libraries umfpack not found in /usr/lib
>
> amd_info:
>
>   libraries amd not found in
> /System/Library/Frameworks/Python.framework/Versions/2.7/lib
>
>   libraries amd not found in /usr/local/lib
>
>   libraries amd not found in /usr/lib
>
>   FOUND:
>
>     libraries = ['amd']
>
>     library_dirs = ['/opt/local/lib']
>
>     swig_opts = ['-I/opt/local/include']
>
>     define_macros = [('SCIPY_AMD_H', None)]
>
>     include_dirs = ['/opt/local/include']
>
>   FOUND:
>
>     libraries = ['umfpack', 'amd']
>
>     library_dirs = ['/opt/local/lib']
>
>     swig_opts = ['-I/opt/local/include', '-I/opt/local/include']
>
>     define_macros = [('SCIPY_UMFPACK_H', None), ('SCIPY_AMD_H', None)]
>
>     include_dirs = ['/opt/local/include']
>
> running install
>
> running build
>
> running config_cc
>
> unifing config_cc, config, build_clib, build_ext, build commands --compiler
> options
>
> running config_fc
>
> unifing config_fc, config, build_clib, build_ext, build commands --fcompiler
> options
>
> running build_src
>
> build_src
>
> building py_modules sources
>
> building library "dfftpack" sources
>
> building library "fftpack" sources
>
> building library "linpack_lite" sources
>
> building library "mach" sources
>
> building library "quadpack" sources
>
> building library "odepack" sources
>
> building library "dop" sources
>
> building library "fitpack" sources
>
> building library "odrpack" sources
>
> building library "minpack" sources
>
> building library "rootfind" sources
>
> building library "superlu_src" sources
>
> building library "arpack_scipy" sources
>
> building library "sc_c_misc" sources
>
> building library "sc_cephes" sources
>
> building library "sc_mach" sources
>
> building library "sc_amos" sources
>
> building library "sc_cdf" sources
>
> building library "sc_specfun" sources
>
> building library "statlib" sources
>
> building extension "scipy.cluster._vq" sources
>
> building extension "scipy.cluster._hierarchy_wrap" sources
>
> building extension "scipy.fftpack._fftpack" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.fftpack.convolve" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.integrate._quadpack" sources
>
> building extension "scipy.integrate._odepack" sources
>
> building extension "scipy.integrate.vode" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.integrate.lsoda" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.integrate._dop" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.interpolate.interpnd" sources
>
> building extension "scipy.interpolate._fitpack" sources
>
> building extension "scipy.interpolate.dfitpack" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
>   adding
> 'build/src.macosx-10.8-intel-2.7/scipy/interpolate/src/dfitpack-f2pywrappers.f'
> to sources.
>
> building extension "scipy.interpolate._interpolate" sources
>
> building extension "scipy.io.matlab.streams" sources
>
> building extension "scipy.io.matlab.mio_utils" sources
>
> building extension "scipy.io.matlab.mio5_utils" sources
>
> building extension "scipy.lib.blas.fblas" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
>   adding
> 'build/src.macosx-10.8-intel-2.7/build/src.macosx-10.8-intel-2.7/scipy/lib/blas/fblas-f2pywrappers.f'
> to sources.
>
> building extension "scipy.lib.blas.cblas" sources
>
>   adding 'build/src.macosx-10.8-intel-2.7/scipy/lib/blas/cblas.pyf' to
> sources.
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.lib.lapack.flapack" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.lib.lapack.clapack" sources
>
>   adding 'build/src.macosx-10.8-intel-2.7/scipy/lib/lapack/clapack.pyf' to
> sources.
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.lib.lapack.calc_lwork" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.linalg._fblas" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
>   adding
> 'build/src.macosx-10.8-intel-2.7/build/src.macosx-10.8-intel-2.7/scipy/linalg/_fblas-f2pywrappers.f'
> to sources.
>
> building extension "scipy.linalg._flapack" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
>   adding
> 'build/src.macosx-10.8-intel-2.7/build/src.macosx-10.8-intel-2.7/scipy/linalg/_flapack-f2pywrappers.f'
> to sources.
>
> building extension "scipy.linalg._flinalg" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.linalg.calc_lwork" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.odr.__odrpack" sources
>
> building extension "scipy.optimize._minpack" sources
>
> building extension "scipy.optimize._zeros" sources
>
> building extension "scipy.optimize._lbfgsb" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.optimize.moduleTNC" sources
>
> building extension "scipy.optimize._cobyla" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.optimize.minpack2" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.optimize._slsqp" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.optimize._nnls" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.signal.sigtools" sources
>
> building extension "scipy.signal._spectral" sources
>
> building extension "scipy.signal.spline" sources
>
> building extension "scipy.sparse.linalg.isolve._iterative" sources
>
> f2py options: []
>
>   adding 'build/src.macosx-10.8-intel-2.7/fortranobject.c' to sources.
>
>   adding 'build/src.macosx-10.8-intel-2.7' to include_dirs.
>
> building extension "scipy.sparse.linalg.dsolve._superlu" sources
>
> building extension "scipy.sparse.linalg.dsolve.umfpack.__umfpack" sources
>
>   adding 'scipy/sparse/linalg/dsolve/umfpack/umfpack.i' to sources.
>
> swig: scipy/sparse/linalg/dsolve/umfpack/umfpack.i
>
> swig -python -I/opt/local/include -I/opt/local/include -I/opt/local/include
> -o
> build/src.macosx-10.8-intel-2.7/scipy/sparse/linalg/dsolve/umfpack/_umfpack_wrap.c
> -outdir build/src.macosx-10.8-intel-2.7/scipy/sparse/linalg/dsolve/umfpack
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i
>
> unable to execute swig: No such file or directory
>
> error: command 'swig' failed with exit status 1
>
> bash-3.2$
>
>
> paul
>
>
>
>
>
>
>
>
> On 10.08.13 23:33, Edward d'Auvergne wrote:
>
> Oh, those are the fat3 commands!  I.e. the universal binaries I build
> for the relax DMG distribution archive.  Try:
>
> bash-3.2$ swig -I/sw/include/suitesparse/ -I/opt/local/include -python
> -o
> build/src.macosx-10.6-intel-2.7/scipy/sparse/linalg/dsolve/umfpack/_umfpack_wrap.c
> -outdir build/src.macosx-10.6-intel-2.7/scipy/sparse/linalg/dsolve/umfpack
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i
>
> Regards,
>
> Edward
>
>
>
> On 10 August 2013 23:28, Edward d'Auvergne <[email protected]>
> wrote:
>
> Hi,
>
> The swig command might be back to front, try:
>
> bash-3.2$ /opt/local/bin/swig -I/opt/local/include/
> -I/sw/include/suitesparse/ -python -o
> build/src.macosx-10.5-fat3-2.7/scipy/sparse/linalg/dsolve/umfpack/_umfpack_wrap.c
> -outdir build/src.macosx-10.5-fat3-2.7/scipy/sparse/linalg/dsolve/umfpack
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i
>
> I'll look more into that one tomorrow.
>
> Regards,
>
> Edward
>
>
>
> On 10 August 2013 22:07, Paul Schanda <[email protected]> wrote:
>
> Hmm, not overly successful.
> I do have the umfpack*.h files in /opt/local/include/umfpack:
>
> [new-host-2:~] paul% ls /opt/local/include/umfpack*.h
>
> /opt/local/include/umfpack.h
> /opt/local/include/umfpack_col_to_triplet.h
> /opt/local/include/umfpack_defaults.h
> /opt/local/include/umfpack_free_numeric.h
> /opt/local/include/umfpack_free_symbolic.h
> /opt/local/include/umfpack_get_determinant.h
> /opt/local/include/umfpack_get_lunz.h
> /opt/local/include/umfpack_get_numeric.h
> /opt/local/include/umfpack_get_symbolic.h
> /opt/local/include/umfpack_global.h
> /opt/local/include/umfpack_load_numeric.h
> /opt/local/include/umfpack_load_symbolic.h
> /opt/local/include/umfpack_numeric.h
> /opt/local/include/umfpack_qsymbolic.h
> /opt/local/include/umfpack_report_control.h
> /opt/local/include/umfpack_report_info.h
> /opt/local/include/umfpack_report_matrix.h
> /opt/local/include/umfpack_report_numeric.h
> /opt/local/include/umfpack_report_perm.h
> /opt/local/include/umfpack_report_status.h
> /opt/local/include/umfpack_report_symbolic.h
> /opt/local/include/umfpack_report_triplet.h
> /opt/local/include/umfpack_report_vector.h
> /opt/local/include/umfpack_save_numeric.h
> /opt/local/include/umfpack_save_symbolic.h
> /opt/local/include/umfpack_scale.h
> /opt/local/include/umfpack_solve.h
> /opt/local/include/umfpack_symbolic.h
> /opt/local/include/umfpack_tictoc.h
> /opt/local/include/umfpack_timer.h
> /opt/local/include/umfpack_transpose.h
> /opt/local/include/umfpack_triplet_to_col.h
> /opt/local/include/umfpack_wsolve.h
> [new-host-2:~] paul%
>
>
> However, I tried using swig, and pointing to /opt/local/include as you
> suggest (trying some variations of the command), but was unsuccessful.
>
> bash-3.2$ /opt/local/bin/swig -I/sw/include/suitesparse/ -python -o
> build/src.macosx-10.5-fat3-2.7/scipy/sparse/linalg/dsolve/umfpack/_umfpack_wrap.c
> -outdir build/src.macosx-10.5-fat3-2.7/scipy/sparse/linalg/dsolve/umfpack
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:192: Error: Unable to find
> 'umfpack.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:193: Error: Unable to find
> 'umfpack_solve.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:194: Error: Unable to find
> 'umfpack_defaults.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:195: Error: Unable to find
> 'umfpack_triplet_to_col.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:196: Error: Unable to find
> 'umfpack_col_to_triplet.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:197: Error: Unable to find
> 'umfpack_transpose.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:198: Error: Unable to find
> 'umfpack_scale.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:200: Error: Unable to find
> 'umfpack_report_symbolic.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:201: Error: Unable to find
> 'umfpack_report_numeric.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:202: Error: Unable to find
> 'umfpack_report_info.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:203: Error: Unable to find
> 'umfpack_report_control.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:215: Error: Unable to find
> 'umfpack_symbolic.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:216: Error: Unable to find
> 'umfpack_numeric.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:225: Error: Unable to find
> 'umfpack_free_symbolic.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:226: Error: Unable to find
> 'umfpack_free_numeric.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:248: Error: Unable to find
> 'umfpack_get_lunz.h'
>
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i:272: Error: Unable to find
> 'umfpack_get_numeric.h'
>
>
> bash-3.2$ /opt/local/bin/swig -I/sw/include/suitesparse/ -python -o
> build/src.macosx-10.5-fat3-2.7/scipy/sparse/linalg/dsolve/umfpack/_umfpack_wrap.c
> -outdir build/src.macosx-10.5-fat3-2.7/scipy/sparse/linalg/dsolve/umfpack
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i -I/opt/local/include/
>
> swig error : Unrecognized option
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i
>
> Use 'swig -help' for available options.
>
>
> bash-3.2$ /opt/local/bin/swig -I/opt/local/include/ -python -o
> build/src.macosx-10.5-fat3-2.7/scipy/sparse/linalg/dsolve/umfpack/_umfpack_wrap.c
> -outdir build/src.macosx-10.5-fat3-2.7/scipy/sparse/linalg/dsolve/umfpack
> scipy/sparse/linalg/dsolve/umfpack/umfpack.i
>
> Unable to open file
> build/src.macosx-10.5-fat3-2.7/scipy/sparse/linalg/dsolve/umfpack/_umfpack_wrap.c:
> No such file or directory
>
> bash-3.2$
>
>
> In fact, I don't have  build/src.macosx-10.5-fat3-2.7
>
> I do have
> build/src.macosx-10.8-intel-2.7/scipy/sparse/linalg/dsolve/umfpack/ but it
> is empty:
>
> bash-3.2$ ls
> build/src.macosx-10.8-intel-2.7/scipy/sparse/linalg/dsolve/umfpack/
>
> bash-3.2$
>
>
> A long way to get it running... :-S
>
> paul
>
>
>
> On 10.08.13 09:39, Edward d'Auvergne wrote:
>
> Hi,
>
> Maybe the files in /opt would be sufficient.  Try copying and pasting the
> swig command in my previous mail
> (http://thread.gmane.org/gmane.science.nmr.relax.devel/4339/focus=4351) and
> add -I/opt/local/include/ as that might just work.  Note these compilation
> commands are for the 'sh' shell, so you need bash or sh to run them.
>
> Regards,
>
> Edward
>
>
>
>
> On Saturday, 10 August 2013, Paul Schanda wrote:
>
> Hi,
>
> I guess I'll get there. Eventually.
>
> In the meantime I don't find suitesparse on my system. At least not at
> /sw/include/suitesparse.
>
> I have a few instances of SuiteSparse on the system, but none of them
> contains umfpack files.
>
> I have a number of umfpack_*.h files, most of them at /opt/local/include:
> /opt/local/include/umfpack.h
> /opt/local/include/umfpack_col_to_triplet.h
> /opt/local/include/umfpack_defaults.h
> /opt/local/include/umfpack_free_numeric.h
> /opt/local/include/umfpack_free_symbolic.h
> /opt/local/include/umfpack_get_determinant.h
> /opt/local/include/umfpack_get_lunz.h
> /opt/local/include/umfpack_get_numeric.h
> /opt/local/include/umfpack_get_symbolic.h
> /opt/local/include/umfpack_global.h
> /opt/local/include/umfpack_load_numeric.h
> /opt/local/include/umfpack_load_symbolic.h
> /opt/local/include/umfpack_numeric.h
> /opt/local/include/umfpack_qsymbolic.h
> /opt/local/include/umfpack_report_control.h
> /opt/local/include/umfpack_report_info.h
> /opt/local/include/umfpack_report_matrix.h
> /opt/local/include/umfpack_report_numeric.h
> /opt/local/include/umfpack_report_perm.h
> /opt/local/include/umfpack_report_status.h
> /opt/local/include/umfpack_report_symbolic.h
> /opt/local/include/umfpack_report_triplet.h
> /opt/local/include/umfpack_report_vector.h
> /opt/local/include/umfpack_save_numeric.h
> /opt/local/include/umfpack_save_symbolic.h
> /opt/local/include/umfpack_scale.h
> /opt/local/include/umfpack_solve.h
> /opt/local/include/umfpack_symbolic.h
> /opt/local/include/umfpack_tictoc.h
> /opt/local/include/umfpack_timer.h
> /opt/local/include/umfpack_transpose.h
> /opt/local/include/umfpack_triplet_to_col.h
> /opt/local/include/umfpack_wsolve.h
>
>
>
> Otherwise, I seem to have suitesparse installed via macports:
>
> [new-host-2:/Users/paul] root# port installed suitesparse
>
> The following ports are currently installed:
>
>   SuiteSparse @3.4.0_0
>
>   SuiteSparse @3.4.0_3
>
>   SuiteSparse @4.0.0_0
>
>   SuiteSparse @4.1.0_0 (active)
>
>
> In the suitesparse directory that is related to macports, there are no
> umfpack files.
>
> [new-host-2:~] paul% ls
> /opt/local/var/macports/sources/rsync.macports.org/release/ports/math/SuiteSparse/files/
>
> UFconfig_UFconfig.mk-patch    patch-CHOLMOD_Lib_Makefile.diff
>
> makefiles.patch
>
> [new-host-2:~] paul% ls
> /opt/local/var/macports/sources/rsync.macports.org/release/ports/math/SuiteSparse/Portfile
>
>
> /opt/local/var/macports/sources/rsync.macports.org/release/ports/math/SuiteSparse/Portfile
>
>
> I could probably download SuiteSparse, but this of course comes at the
> risk of downloading again something that does not talk to the other things
> required...
> As you say, it's tough with multiple python versions around...
>
> cheers -
>
> Paul
>
> On 09.08.13 16:30, Edward d'Auvergne wrote:
>
> Hi,
>
> You're actually almost there.  That swig error with umfpack.i is
> exactly the same problem I had yesterday when I was multiply
> reinstalling everything on my Mac system.  The problem was that it
> could not find the suitesparse header *.h files.  I found these on my
> system at /sw/include/suitesparse - please make sure you have this
> directory with umfpack_*.h files in it too - and that is what the
> C_INCLUDE_PATH variable is for.  The rest of the problems is due to
> the C shell so, for avoiding a lot of pain, I would recommend
> temporarily switching to bash.  C shell issues caused the PATH error
> message you saw.  So please try the following:
>
> [gre:~/Downloads/scipy-0.12.0] % bash
> gre:scipy-0.12.0 $ PATH=/usr/local/bin/:$PATH
> C_INCLUDE_PATH=/sw/include/
> suitesparse/ ~/bin/python2.7 setup.py
> install
>
> It is imperative to have the PATH and C_INCLUDE_PATH environmental
> variables set this way before the Python command.  Otherwise Scipy
> will not be in a functional state and the import will give exactly the
> error you saw.  And /sw/include/suitesparse/ must exist and contain a
> pile of umfpack_*.h files in it.  We almost have it running now!  Life
> is tough having multiple Python versions around on a Mac!
>
> Regards,
>
> Edward
>
>
>
> --
> Paul Schanda, Ph.D.
> Biomolecular NMR group
> Institut de Biologie Structurale Jean-Pierre Ebel (IBS)
> 41, rue Jules Horowitz
> F-38027 Grenoble
> France
> +33 438 78 95 55
> [email protected]
> http://www.ibs.fr/groups/biomolecular-nmr-spectroscopy?lang=en
>
>
>
> --
> Paul Schanda, Ph.D.
> Biomolecular NMR group
> Institut de Biologie Structurale Jean-Pierre Ebel (IBS)
> 41, rue Jules Horowitz
> F-38027 Grenoble
> France
> +33 438 78 95 55
> [email protected]
> http://www.ibs.fr/groups/biomolecular-nmr-spectroscopy?lang=en

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