URL:
<http://gna.org/bugs/?21032>
Summary: running relax disp branch, undefined symbol
clapack-sgesv in scipy linalg.
Project: relax
Submitted by: tlinnet
Submitted on: Sat 17 Aug 2013 09:19:34 PM GMT
Category: relax's source code
Severity: 3 - Normal
Priority: 5 - Normal
Status: None
Privacy: Public
Assigned to: None
Originator Name:
Originator Email:
Open/Closed: Open
Discussion Lock: Any
Release: Branches
Operating System: GNU/Linux
_______________________________________________________
Details:
Hi.
I tried the test suite for
relax 3.0.0 - Runs fine
relax trunk - Runs fine
relax disp - Error
For the relax disp branch, I get a module import error.
It relates to undefined symbol clapack-sgesv.
It is probably a error package.
Here is the error I get when running the test-suite
[tlinnet@haddock ~/relax_results]$ relax_disp --test-suite -l
system-tests_disp.log
Traceback (most recent call last):
File "/sbinlab2/software/bin/relax_disp", line 9, in <module>
import relax
File "/sbinlab2/software/NMR-relax/relax_disp/relax.py", line 66, in
<module>
user_functions.initialise()
File "/sbinlab2/software/NMR-relax/relax_disp/user_functions/__init__.py",
line 95, in initialise
import user_functions.consistency_tests
File
"/sbinlab2/software/NMR-relax/relax_disp/user_functions/consistency_tests.py",
line 29, in <module>
from specific_analyses.setup import consistency_tests_obj
File "/sbinlab2/software/NMR-relax/relax_disp/specific_analyses/setup.py",
line 35, in <module>
from specific_analyses.relax_disp.api import Relax_disp
File
"/sbinlab2/software/NMR-relax/relax_disp/specific_analyses/relax_disp/api.py",
line 52, in <module>
from target_functions.relax_disp import Dispersion
File
"/sbinlab2/software/NMR-relax/relax_disp/target_functions/relax_disp.py", line
37, in <module>
from lib.dispersion.ns_2site_3d import r2eff_ns_2site_3D
File
"/sbinlab2/software/NMR-relax/relax_disp/lib/dispersion/ns_2site_3d.py", line
40, in <module>
from scipy.linalg import expm
File "/usr/lib64/python2.6/site-packages/scipy/linalg/__init__.py", line 8,
in <module>
from basic import *
File "/usr/lib64/python2.6/site-packages/scipy/linalg/basic.py", line 17, in
<module>
from lapack import get_lapack_funcs
File "/usr/lib64/python2.6/site-packages/scipy/linalg/lapack.py", line 18,
in <module>
from scipy.linalg import clapack
ImportError: /usr/lib64/python2.6/site-packages/scipy/linalg/clapack.so:
undefined symbol: clapack_sgesv
------------
I cannot not even start relax_disp
[tlinnet@haddock ~/relax_results]$ relax_disp
Traceback (most recent call last):
File "/sbinlab2/software/bin/relax_disp", line 9, in <module>
import relax
File "/sbinlab2/software/NMR-relax/relax_disp/relax.py", line 66, in
<module>
user_functions.initialise()
File "/sbinlab2/software/NMR-relax/relax_disp/user_functions/__init__.py",
line 95, in initialise
import user_functions.consistency_tests
File
"/sbinlab2/software/NMR-relax/relax_disp/user_functions/consistency_tests.py",
line 29, in <module>
from specific_analyses.setup import consistency_tests_obj
File "/sbinlab2/software/NMR-relax/relax_disp/specific_analyses/setup.py",
line 35, in <module>
from specific_analyses.relax_disp.api import Relax_disp
File
"/sbinlab2/software/NMR-relax/relax_disp/specific_analyses/relax_disp/api.py",
line 52, in <module>
from target_functions.relax_disp import Dispersion
File
"/sbinlab2/software/NMR-relax/relax_disp/target_functions/relax_disp.py", line
37, in <module>
from lib.dispersion.ns_2site_3d import r2eff_ns_2site_3D
File
"/sbinlab2/software/NMR-relax/relax_disp/lib/dispersion/ns_2site_3d.py", line
40, in <module>
from scipy.linalg import expm
File "/usr/lib64/python2.6/site-packages/scipy/linalg/__init__.py", line 8,
in <module>
from basic import *
File "/usr/lib64/python2.6/site-packages/scipy/linalg/basic.py", line 17, in
<module>
from lapack import get_lapack_funcs
File "/usr/lib64/python2.6/site-packages/scipy/linalg/lapack.py", line 18,
in <module>
from scipy.linalg import clapack
ImportError: /usr/lib64/python2.6/site-packages/scipy/linalg/clapack.so:
undefined symbol: clapack_sgesv
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