URL:
<http://gna.org/bugs/?21187>
Summary: "NoneType" error message while loading side chain
amide protons
Project: relax
Submitted by: mab
Submitted on: Thu 10 Oct 2013 10:17:18 AM GMT
Category: relax's source code
Severity: 3 - Normal
Priority: 5 - Normal
Status: None
Privacy: Public
Assigned to: None
Originator Name:
Originator Email:
Open/Closed: Open
Discussion Lock: Any
Release: 3.0.0
Operating System: None
_______________________________________________________
Details:
First, set up you data pipe and read a pdb with already-attached protons (with
Trp residues).
pipe.create("example", 'mf')
structure.read_pdb('molecule.pdb', set_mol_name='my_molecule')
Loading backbone N and H works, as well as NE1:
structure.load_spins('@N', ave_pos=True)
structure.load_spins('@NE1', ave_pos=True)
structure.load_spins('@H', ave_pos=True)
But loading the side chain amide proton fails:
relax> structure.load_spins('@HE1', ave_pos=True)
Adding the following spins to the relax data store.
Traceback (most recent call last):
File "<console>", line 1, in <module>
File "/usr/local/Cellar/relax/3.0.0/prompt/uf_objects.py", line 221, in
__call__
self._backend(*new_args, **uf_kargs)
File "/usr/local/Cellar/relax/3.0.0/pipe_control/structure/main.py", line
608, in load_spins
spin_cont.pos = pos
AttributeError: 'NoneType' object has no attribute 'pos'
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?21187>
_______________________________________________
Message sent via/by Gna!
http://gna.org/
_______________________________________________
relax (http://www.nmr-relax.com)
This is the relax-devel mailing list
[email protected]
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-devel
