Hi Edward. The code change did not make a difference.
The wxPython demo runs fine: http://wiki.nmr-relax.com/Installation_test#wxPython_test I see the smiley face fine. In the terminal there are still the fonts issue, but not the iCCP warning. Hm, I guess i will see what happens if I start using the GUI with relax on real data applications. Anyway, I will probably run a lot more scripting than GUI. And I will wait to see if there comes a fix for wxPython for Mavericks. Best Troels 2013/12/4 Edward d'Auvergne <[email protected]>: > Hi, > > There are literally thousands of places where the wx.CallAfter() call > could be used. This may not even fix the problem. Does the error go > away if you make the change? On a different note, do you see those > wxPython iCCP and font issues if you run the wx_demo? If so, then > there is no point searching for these errors in relax, for there are > none. It will be a wxPython issue. My feeling is that everything you > see is due to problems with wxPython, as my tests on multiple > operating system, both 32 and 64-bit show nothing. The crash in the > test suite might be fixable from within relax however. > > Regards, > > Edward > > > On 4 December 2013 11:26, Troels Emtekær Linnet <[email protected]> wrote: >> Hm. >> >> It seems that many people have problems with wxPython 2.9 on Mavericks. >> I have tried installing wxPython 2.8, but that would not work on my system. >> >> The GUI will show up when starting relax. >> Complaining about: "iCCP: known incorrect sRGB profile". >> And terminal will show: >> >> " >> 2013-12-03 22:56:31.956 Python[1180:d0b] CoreText performance note: Client >> called CTFontCreateWithName() using name ".Lucida Grande UI" and got font >> with >> PostScript name ".LucidaGrandeUI". For best performance, only use PostScript >> names when calling this API. >> 2013-12-03 22:56:31.956 Python[1180:d0b] CoreText performance note: Set a >> breakpoint on CTFontLogSuboptimalRequest to debug. >> 2013-12-03 22:56:37.521 Python[1180:d0b] CoreText performance note: Client >> called CTFontCreateWithName() using name ".Lucida Grande UI" and got font >> with >> PostScript name ".LucidaGrandeUI". For best performance, only use PostScript >> names when calling this API. >> " >> >> This problem has been reported before: >> http://successfulsoftware.net/2013/10/23/fixing-qt-4-for-mac-os-x-10-9-mavericks/ >> https://bugreports.qt-project.org/browse/QTBUG-32789 >> http://wxpython-users.1045709.n5.nabble.com/another-possible-issue-with-new-Mac-OS-Mavericks-td5719024.html >> >> >> In the relax GUI: >> >> The Unit test will perform fine. >> The GUI test will crash relax. >> The system test will run for a long time, and crash at some point. >> (After 30 dots ?) >> It is hard to see at which points it crashes. >> >> The system test performed in terminal goes fine. >> >> >> ------- >> I found one instance of "AppendText" in line 1048. >> Should I try to alter it ? >> >> from: >> self.AppendText(string_list[i]) >> >> to: >> wx.CallAfter(self.textArea.AppendText, string_list[i]) >> or >> wx.CallAfter(self.AppendText, string_list[i]) >> >> >> ------- >> >> >> >> >> [tlinnet@haddock relax_trunk]$ grep -r "AppendText" ./gui >> Binary file ./gui/controller.pyc matches >> ./gui/controller.py: self.AppendText(string_list[i]) >> >> >> [tlinnet@haddock relax_trunk]$ grep -r "wx.CallAfter(" ./gui >> ./gui/spin_viewer/frame.py: wx.CallAfter(item.Enable, enable) >> ./gui/spin_viewer/frame.py: wx.CallAfter(self.bar.EnableTool, >> self.spin_loader_id, enable) >> ./gui/spin_viewer/frame.py: wx.CallAfter(self.pipe_name.Enable, >> enable) >> ./gui/spin_viewer/frame.py: wx.CallAfter(self.refresh_safe) >> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >> self.TB_FILE_NEW, enable) >> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >> self.TB_FILE_CLOSE, enable) >> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >> self.TB_FILE_CLOSE_ALL, enable) >> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >> self.TB_FILE_OPEN, enable) >> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >> self.TB_FILE_SAVE, enable) >> ./gui/relax_gui.py: wx.CallAfter(self.toolbar.EnableTool, >> self.TB_FILE_SAVE_AS, enable) >> ./gui/relax_gui.py: >> wx.CallAfter(self.controller.main_gauge.SetValue, 100) >> ./gui/relax_gui.py: wx.CallAfter(self.show_results_viewer_safe, >> warn=True) >> ./gui/relax_gui.py: wx.CallAfter(dlg.ShowModal) >> ./gui/relax_gui.py: wx.CallAfter(self.show_results_viewer_safe, >> warn=False) >> ./gui/relax_gui.py: wx.CallAfter(self.status_bar.SetStatusText, >> "(C) 2001-2013 the relax development team", 0) >> ./gui/relax_gui.py: wx.CallAfter(self.status_bar.SetStatusText, >> "Current data pipe:", 1) >> ./gui/relax_gui.py: wx.CallAfter(self.status_bar.SetStatusText, pipe, >> 2) >> ./gui/icons.py: wx.CallAfter(self.gui.exit_gui) >> ./gui/results_viewer.py: wx.CallAfter(self.pipe_name.Enable, enable) >> ./gui/results_viewer.py: wx.CallAfter(self.button_open.Enable, enable) >> ./gui/results_viewer.py: wx.CallAfter(self.refresh_safe) >> ./gui/results_viewer.py: wx.CallAfter(self.Raise) >> ./gui/analyses/auto_noe.py: >> wx.CallAfter(self.field_nmr_frq.Enable, enable) >> ./gui/analyses/auto_noe.py: >> wx.CallAfter(self.field_results_dir.Enable, enable) >> ./gui/analyses/auto_noe.py: >> wx.CallAfter(self.spin_systems.Enable, enable) >> ./gui/analyses/auto_noe.py: >> wx.CallAfter(self.peak_intensity.Enable, enable) >> ./gui/analyses/auto_noe.py: >> wx.CallAfter(self.button_exec_relax.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.field_results_dir.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.field_pre_run_dir.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.spin_systems.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.field_cluster.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.button_isotope.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.button_r1.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.button_chemical_shift.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.button_interatom_define.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.peak_intensity.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.model_field.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.button_exec_relax.Enable, enable) >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.field_cluster.SetValue, "free spins") >> ./gui/analyses/auto_relax_disp.py: >> wx.CallAfter(self.field_cluster.SetValue, text) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.field_results_dir.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.spin_systems.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.relax_data.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.button_dipole_pair.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.button_csa.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.button_isotope_heteronuc.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.button_isotope_proton.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.local_tm_model_field.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.mf_model_field.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.grid_inc.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.mc_sim_num.Enable, enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.max_iter.Enable, enable) >> ./gui/analyses/auto_model_free.py: wx.CallAfter(self.mode.Enable, >> enable) >> ./gui/analyses/auto_model_free.py: >> wx.CallAfter(self.button_exec_relax.Enable, enable) >> ./gui/analyses/auto_rx_base.py: >> wx.CallAfter(self.field_nmr_frq.Enable, enable) >> ./gui/analyses/auto_rx_base.py: >> wx.CallAfter(self.field_results_dir.Enable, enable) >> ./gui/analyses/auto_rx_base.py: >> wx.CallAfter(self.spin_systems.Enable, enable) >> ./gui/analyses/auto_rx_base.py: >> wx.CallAfter(self.peak_intensity.Enable, enable) >> ./gui/analyses/auto_rx_base.py: >> wx.CallAfter(self.grid_inc.Enable, enable) >> ./gui/analyses/auto_rx_base.py: >> wx.CallAfter(self.mc_sim_num.Enable, enable) >> ./gui/analyses/auto_rx_base.py: >> wx.CallAfter(self.button_exec_relax.Enable, enable) >> ./gui/analyses/__init__.py: >> wx.CallAfter(self.notebook.SetSelection, self._current) >> ./gui/analyses/__init__.py: >> wx.CallAfter(status.observers.gui_analysis.notify) >> ./gui/analyses/base.py: >> wx.CallAfter(self.spin_systems.SetValue, >> str_to_gui(self.spin_count())) >> ./gui/uf_objects.py: wx.CallAfter(app.gui.controller.Raise) >> ./gui/relax_prompt.py: wx.CallAfter(self.prompt.Enable, enable) >> ./gui/controller.py: wx.CallAfter(self.main_gauge.Pulse) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_rx.SetValue, 0) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, 0) >> ./gui/controller.py: >> wx.CallAfter(self.progress_gauge_mf.SetValue, 0) >> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >> ./gui/controller.py: wx.CallAfter(self.cdp.SetValue, str_to_gui(pipe)) >> ./gui/controller.py: wx.CallAfter(self.name.SetValue, >> str_to_gui(name)) >> ./gui/controller.py: wx.CallAfter(self.panel_rx.Show) >> ./gui/controller.py: wx.CallAfter(self.update_rx) >> ./gui/controller.py: wx.CallAfter(self.panel_rx.Hide) >> ./gui/controller.py: wx.CallAfter(self.panel_mf.Show) >> ./gui/controller.py: wx.CallAfter(self.update_mf) >> ./gui/controller.py: wx.CallAfter(self.panel_mf.Hide) >> ./gui/controller.py: wx.CallAfter(self.update_gauge) >> ./gui/controller.py: wx.CallAfter(self.main_panel.Layout) >> ./gui/controller.py: wx.CallAfter(self.timer.Start, 100) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_rx.SetValue, >> 100) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, >> 100) >> ./gui/controller.py: >> wx.CallAfter(self.progress_gauge_mf.SetValue, 100) >> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 100) >> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_rx.SetValue, >> 0) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, >> 0) >> ./gui/controller.py: >> wx.CallAfter(self.progress_gauge_mf.SetValue, 0) >> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, 100) >> ./gui/controller.py: >> wx.CallAfter(self.progress_gauge_mf.SetValue, 100) >> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 100) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, 0) >> ./gui/controller.py: >> wx.CallAfter(self.progress_gauge_mf.SetValue, 0) >> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >> ./gui/controller.py: >> wx.CallAfter(self.global_model_mf.SetValue, >> str_to_gui(status.auto_analysis[key].diff_model)) >> ./gui/controller.py: >> wx.CallAfter(self.progress_gauge_mf.SetValue, percent) >> ./gui/controller.py: >> wx.CallAfter(self.progress_gauge_mf.SetValue, 0) >> ./gui/controller.py: >> wx.CallAfter(self.progress_gauge_mf.SetValue, percent) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_mf.SetValue, >> percent) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_rx.SetValue, 0) >> ./gui/controller.py: wx.CallAfter(self.main_gauge.SetValue, 0) >> ./gui/controller.py: wx.CallAfter(self.mc_gauge_rx.SetValue, >> percent) >> ./gui/controller.py: wx.CallAfter(self.control.write) >> ./gui/controller.py: wx.CallAfter(self.control.write) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_bundle.Enable, >> False) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_create.Enable, >> False) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_copy.Enable, False) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_delete.Enable, >> False) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_hybrid.Enable, >> False) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_switch.Enable, >> False) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_bundle.Enable, >> True) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_create.Enable, >> True) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_copy.Enable, True) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_delete.Enable, >> True) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_hybrid.Enable, >> True) >> ./gui/pipe_editor.py: wx.CallAfter(self.button_switch.Enable, >> True) >> ./gui/pipe_editor.py: wx.CallAfter(self.Raise) >> ./gui/pipe_editor.py: wx.CallAfter(self.update_grid_safe) >> ./gui/interpreter.py: wx.CallAfter(gui_raise, >> instance, raise_flag=False) >> ./gui/components/base_list.py: wx.CallAfter(self.build_element_safe) >> >> 2013/12/4 Edward d'Auvergne <[email protected]>: >>> Hi, >>> >>> It could be related to the first link. These issues are difficult to >>> track down and find, as a GUI must naturally run multi-threaded and >>> multi-threaded debugging is a nightmare. The problem is likely to be >>> fixed by wrapping a call to a wxPython method or function within a >>> wx.CallAfter() call. Grep the sources to see how often we have used >>> this construct already. This seems to only be triggered on your >>> system as I do not see it on Mac OS X 10.6, 10.7 and 10.8, Windows >>> 2000, Vista and 7, or Linux (Mandriva 2008.1 32-bit, Mageia 1 64-bit, >>> Mageia 3 64-bit, SUSE 64-bit, etc.). It may be related to wxPython >>> 2.9.5.0. >>> >>> This does not mean that it is not a bug in the relax GUI sources, just >>> that it has never been uncovered before. One trick is to find a way >>> of reliably and quickly reproducing the error, maybe by running a >>> single GUI test, and then to use the print statements to find exactly >>> where the error occurred. Then return statements or massive code >>> deletion can be used to exit a function early. If the bug is gone >>> after that, you know the error was in the part that was deleted. Then >>> this can be repeated until the bad function call can be found. The >>> error could also be in the GUI test itself. Here wx.Yield() calls are >>> often needed to prevent racing, as the test runs the GUI code much, >>> much faster than what a user sitting at a computer could ever do. >>> >>> Regards, >>> >>> Edward >>> >>> >>> >>> On 3 December 2013 22:23, Troels E. Linnet >>> <[email protected]> wrote: >>>> URL: >>>> <http://gna.org/bugs/?21324> >>>> >>>> Summary: GUI error on mac OS X Maverics 10.9 >>>> Project: relax >>>> Submitted by: tlinnet >>>> Submitted on: Tue 03 Dec 2013 09:23:31 PM GMT >>>> Category: None >>>> Severity: 3 - Normal >>>> Priority: 3 - Low >>>> Status: None >>>> Privacy: Public >>>> Assigned to: None >>>> Originator Name: >>>> Originator Email: >>>> Open/Closed: Open >>>> Discussion Lock: Any >>>> Release: Repository: trunk >>>> Operating System: Mac OS X (Intel) >>>> >>>> _______________________________________________________ >>>> >>>> Details: >>>> >>>> I have tried to use: >>>> wxPython2.9-osx-2.9.5.0-cocoa-py2.7.dmg >>>> and >>>> brew install wxmac >>>> >>>> to get the same GUI errors. >>>> >>>> Log attached. >>>> >>>> *** Terminating app due to uncaught exception 'NSRangeException', reason: >>>> '*** >>>> -[__NSArrayM objectAtIndex:]: index 18446744073709551615 beyond bounds for >>>> empty array' >>>> >>>> Could it be related to this post? >>>> http://stackoverflow.com/questions/17246160/textctrl-providing-an-out-of-bound-exception-in-wxpython >>>> >>>> http://stackoverflow.com/questions/13085683/xcode-terminating-app-due-to-uncaught-exception-nsrangeexception >>>> >>>> http://stackoverflow.com/questions/4289894/terminating-app-due-to-uncaught-exception-nsrangeexception-reason >>>> >>>> I will now try with: >>>> wxPython2.9-osx-2.9.5.0-carbon-py2.7.dmg >>>> >>>> >>>> >>>> >>>> >>>> _______________________________________________________ >>>> >>>> File Attachments: >>>> >>>> >>>> ------------------------------------------------------- >>>> Date: Tue 03 Dec 2013 09:23:31 PM GMT Name: gui_error.log Size: 70kB >>>> By: >>>> tlinnet >>>> >>>> <http://gna.org/bugs/download.php?file_id=19415> >>>> >>>> _______________________________________________________ >>>> >>>> Reply to this item at: >>>> >>>> <http://gna.org/bugs/?21324> >>>> >>>> _______________________________________________ >>>> Message sent via/by Gna! >>>> http://gna.org/ >>>> >>>> >>>> _______________________________________________ >>>> relax (http://www.nmr-relax.com) >>>> >>>> This is the relax-devel mailing list >>>> [email protected] >>>> >>>> To unsubscribe from this list, get a password >>>> reminder, or change your subscription options, >>>> visit the list information page at >>>> https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
