Seriously though, you could embed the image (and maybe input files) into the wiki.
Regards, Edward On 5 May 2014 15:02, Edward d'Auvergne <[email protected]> wrote: > You mean the part about OpenDX being so ugly ;) > > On 5 May 2014 14:52, Troels Emtekær Linnet <[email protected]> wrote: >> Cheers ! >> >> I put it at the wiki, as a How-to. >> >> http://wiki.nmr-relax.com/Dx_map#How_to_for_relax_disp >> >> 2014-05-05 14:31 GMT+02:00 Edward d'Auvergne <[email protected]>: >>> Hi Troels, >>> >>> You are correct that OpenDX is ugly! It's quite old software and it >>> uses and ancient GUI widget set - Motif. Despite this, the software >>> is incredibly powerful for visualising optimisation spaces (among >>> other things). It is especially useful for showing why certain models >>> or optimisation fails. >>> >>> Anyway, the way I run this is: >>> >>> - Run 'dx', >>> - Click on 'Edit Visual Programs...', >>> - Select the map.net program created by relax, >>> - Now I'm getting unrecognised comment errors - strange, I've not seen >>> that before :S. I'm using OpenDX 4.4.4 for Linux, so that's probably >>> the difference. Note the files you have attached are not those >>> directly from relax, you must have saved in your OpenDX version. >>> - Select the menu entry 'Execute->Execute on change'. >>> >>> That's it. I now have a 3D frame, but nothing in it. Therefore the >>> contour levels must be too low or high. From the map file, the values >>> are in the hundreds of thousands. Then: >>> >>> - In the main program window, double click on the 'Isosurface elements'. >>> - Change the values until you see surfaces. In the first the value is >>> 500. I changed this to 500,000. >>> - In the second, 100 -> 100,000. >>> - In the third, 20 -> 20,000. >>> - In the last, 7 -> 7,000. >>> >>> This should maybe be performed by the dx.map user function, >>> determining reasonable contour levels, but I have never implemented >>> this. Anyway, now I have a proper plot. With a bit of zooming, >>> clicking on 'File -> Save image' in the "Surface" window, "allowing >>> rendering", and outputting to a large TIFF file, "save current", then >>> "apply", I have the image cropped and converted to PNG in the GIMP at >>> https://gna.org/bugs/download.php?file_id=20641. Note that for a good >>> resolution plot, you will need many more increments. Using the lower >>> and upper dx.map arguments will be useful to zoom into the space. >>> >>> Regards, >>> >>> Edward >>> >>> >>> >>> On 5 May 2014 01:58, Troels E. Linnet <[email protected]> >>> wrote: >>>> Follow-up Comment #4, bug #22012 (project relax): >>>> >>>> Hi Edward. >>>> >>>> Can you run this map? >>>> >>>> I bought OpenDX (25$) from http://vizsolutions.com/. >>>> >>>> And new I have these 4 files. >>>> >>>> But the program is maybe the ugliest in the World! >>>> And I don't know how get a image? >>>> >>>> Can you run this? >>>> >>>> >>>> (file #20637, file #20638, file #20639, file #20640) >>>> _______________________________________________________ >>>> >>>> Additional Item Attachment: >>>> >>>> File name: map.cfg Size:0 KB >>>> File name: map.net Size:37 KB >>>> File name: map.general Size:0 KB >>>> File name: map Size:280 KB >>>> >>>> >>>> _______________________________________________________ >>>> >>>> Reply to this item at: >>>> >>>> <http://gna.org/bugs/?22012> >>>> >>>> _______________________________________________ >>>> Message sent via/by Gna! >>>> http://gna.org/ >>>> >>>> >>>> _______________________________________________ >>>> relax (http://www.nmr-relax.com) >>>> >>>> This is the relax-devel mailing list >>>> [email protected] >>>> >>>> To unsubscribe from this list, get a password >>>> reminder, or change your subscription options, >>>> visit the list information page at >>>> https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
