Hi, On the latest relax code, I just ran:
$ relax -s Relax_disp.test_hansen_cpmg_data_auto_analysis -d and the test passed. Do you have some uncommitted (or dcommitted) code? Cheers, Edward On 5 May 2014 15:30, Troels Emtekær Linnet <[email protected]> wrote: > Hi Edward. > > The error comes from AIC selection. > > model_selection(method='AIC', modsel_pipe='final - relax_disp', > bundle='relax_disp', pipes=['No Rex - relax_disp', 'LM63 - > relax_disp', 'CR72 - relax_disp', 'IT99 - relax_disp']) > AIC model selection. > > > The spin cluster [':4@N']. > debug> Lock 'pipe_lock': Acquisition by 'switch'. > debug> Lock 'pipe_lock': Release by 'switch'. > debug> Lock 'pipe_lock': Acquisition by 'switch'. > debug> Lock 'pipe_lock': Release by 'switch'. > debug> Execution lock: Release by 'relax_disp' ('auto-analysis' mode). > debug> Execution lock: Release by 'script UI' ('script' mode). > E > ============================== > ======================================== > ERROR: test_hansen_cpmg_data_auto_analysis > (test_suite.system_tests.relax_disp.Relax_disp) > Test of the dispersion auto-analysis using Dr. Flemming Hansen's CPMG data. > ---------------------------------------------------------------------- > Traceback (most recent call last): > File > "/Users/tlinnet/software/relax_trunk/test_suite/system_tests/relax_disp.py", > line 1256, in test_hansen_cpmg_data_auto_analysis > self.interpreter.run(script_file=status.install_path + > sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'relax_disp'+sep+'hansen_data.py') > File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", > line 275, in run > return run_script(intro=self.__intro_string, local=locals(), > script_file=script_file, show_script=self.__show_script, > raise_relax_error=self.__raise_relax_error) > File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", > line 569, in run_script > return console.interact(intro, local, script_file, > show_script=show_script, raise_relax_error=raise_relax_error) > File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", > line 468, in interact_script > exec_script(script_file, local) > File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", > line 347, in exec_script > runpy.run_module(module, globals) > File > "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py", > line 180, in run_module > fname, loader, pkg_name) > File > "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py", > line 72, in _run_code > exec code in run_globals > File > "/Users/tlinnet/software/relax_trunk/test_suite/system_tests/scripts/relax_disp/hansen_data.py", > line 58, in <module> > Relax_disp(pipe_name=pipe_name, pipe_bundle=pipe_bundle, > results_dir=ds.tmpdir, models=MODELS, grid_inc=GRID_INC, > mc_sim_num=MC_NUM, numeric_only=ds.numeric_only) > File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py", > line 124, in __init__ > self.run() > File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py", > line 502, in run > self.interpreter.model_selection(method=self.modsel, > modsel_pipe=self.name_pipe('final'), bundle=self.pipe_bundle, > pipes=self.model_pipes) > File "/Users/tlinnet/software/relax_trunk/prompt/uf_objects.py", > line 221, in __call__ > self._backend(*new_args, **uf_kargs) > File "/Users/tlinnet/software/relax_trunk/pipe_control/model_selection.py", > line 214, in select > k, n, chi2 = model_statistics[pipe](model_info, global_stats=global_flag) > File > "/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/api.py", > line 698, in model_statistics > k = param_num(spins=spins) > File > "/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/parameters.py", > line 900, in param_num > raise RelaxError("The number of parameters for each spin in the > cluster are not the same.") > RelaxError: RelaxError: The number of parameters for each spin in the > cluster are not the same. > > 2014-05-05 14:38 GMT+02:00 Edward d'Auvergne <[email protected]>: >> Hi Troels, >> >> But the model_statistics() method was never broken? If it wasn't >> working, that would be because of a problem elsewhere. Please revert >> this commit. I would like to see where the breakage occurs. >> >> Cheers, >> >> Edward >> >> >> >> On 5 May 2014 02:23, Troels Emtekær Linnet <[email protected]> wrote: >>> This commit did no go so well: >>> relax -s Relax_disp.test_hansen_cpmg_data_auto_analysis -d >>> >>> model_selection(method='AIC', modsel_pipe='final - relax_disp', >>> bundle='relax_disp', pipes=['No Rex - relax_disp', 'LM63 - >>> relax_disp', 'CR72 - relax_disp', 'IT99 - relax_disp']) >>> AIC model selection. >>> >>> >>> The spin cluster [':4@N']. >>> debug> Lock 'pipe_lock': Acquisition by 'switch'. >>> debug> Lock 'pipe_lock': Release by 'switch'. >>> debug> Lock 'pipe_lock': Acquisition by 'switch'. >>> debug> Lock 'pipe_lock': Release by 'switch'. >>> debug> Execution lock: Release by 'relax_disp' ('auto-analysis' mode). >>> debug> Execution lock: Release by 'script UI' ('script' mode). >>> E >>> ====================================================================== >>> ERROR: test_hansen_cpmg_data_auto_analysis >>> (test_suite.system_tests.relax_disp.Relax_disp) >>> Test of the dispersion auto-analysis using Dr. Flemming Hansen's CPMG data. >>> ---------------------------------------------------------------------- >>> Traceback (most recent call last): >>> File >>> "/Users/tlinnet/software/relax_trunk/test_suite/system_tests/relax_disp.py", >>> line 1256, in test_hansen_cpmg_data_auto_analysis >>> self.interpreter.run(script_file=status.install_path + >>> sep+'test_suite'+sep+'system_tests'+sep+'scripts'+sep+'relax_disp'+sep+'hansen_data.py') >>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", >>> line 275, in run >>> return run_script(intro=self.__intro_string, local=locals(), >>> script_file=script_file, show_script=self.__show_script, >>> raise_relax_error=self.__raise_relax_error) >>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", >>> line 569, in run_script >>> return console.interact(intro, local, script_file, >>> show_script=show_script, raise_relax_error=raise_relax_error) >>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", >>> line 468, in interact_script >>> exec_script(script_file, local) >>> File "/Users/tlinnet/software/relax_trunk/prompt/interpreter.py", >>> line 347, in exec_script >>> runpy.run_module(module, globals) >>> File >>> "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py", >>> line 180, in run_module >>> fname, loader, pkg_name) >>> File >>> "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/runpy.py", >>> line 72, in _run_code >>> exec code in run_globals >>> File >>> "/Users/tlinnet/software/relax_trunk/test_suite/system_tests/scripts/relax_disp/hansen_data.py", >>> line 58, in <module> >>> Relax_disp(pipe_name=pipe_name, pipe_bundle=pipe_bundle, >>> results_dir=ds.tmpdir, models=MODELS, grid_inc=GRID_INC, >>> mc_sim_num=MC_NUM, numeric_only=ds.numeric_only) >>> File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py", >>> line 124, in __init__ >>> self.run() >>> File "/Users/tlinnet/software/relax_trunk/auto_analyses/relax_disp.py", >>> line 502, in run >>> self.interpreter.model_selection(method=self.modsel, >>> modsel_pipe=self.name_pipe('final'), bundle=self.pipe_bundle, >>> pipes=self.model_pipes) >>> File "/Users/tlinnet/software/relax_trunk/prompt/uf_objects.py", >>> line 221, in __call__ >>> self._backend(*new_args, **uf_kargs) >>> File >>> "/Users/tlinnet/software/relax_trunk/pipe_control/model_selection.py", >>> line 214, in select >>> k, n, chi2 = model_statistics[pipe](model_info, >>> global_stats=global_flag) >>> File >>> "/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/api.py", >>> line 698, in model_statistics >>> k = param_num(spins=spins) >>> File >>> "/Users/tlinnet/software/relax_trunk/specific_analyses/relax_disp/parameters.py", >>> line 900, in param_num >>> raise RelaxError("The number of parameters for each spin in the >>> cluster are not the same.") >>> RelaxError: RelaxError: The number of parameters for each spin in the >>> cluster are not the same. >>> >>> >>> ---------- Forwarded message ---------- >>> From: <[email protected]> >>> Date: 2014-05-05 1:59 GMT+02:00 >>> Subject: r22954 - /trunk/specific_analyses/relax_disp/api.py >>> To: [email protected] >>> >>> >>> Author: tlinnet >>> Date: Mon May 5 01:59:58 2014 >>> New Revision: 22954 >>> >>> URL: http://svn.gna.org/viewcvs/relax?rev=22954&view=rev >>> Log: >>> Attempt to fix function model_statistics() in API for relax_disp. >>> >>> bug #22012(https://gna.org/bugs/?22012): dx.map not implemented for >>> pipe type relax_disp. >>> >>> Modified: >>> trunk/specific_analyses/relax_disp/api.py >>> >>> Modified: trunk/specific_analyses/relax_disp/api.py >>> URL: >>> http://svn.gna.org/viewcvs/relax/trunk/specific_analyses/relax_disp/api.py?rev=22954&r1=22953&r2=22954&view=diff >>> ============================================================================== >>> --- trunk/specific_analyses/relax_disp/api.py (original) >>> +++ trunk/specific_analyses/relax_disp/api.py Mon May 5 01:59:58 2014 >>> @@ -678,9 +678,21 @@ >>> @rtype: tuple of (int, int, float) >>> """ >>> >>> + # Bad argument combination. >>> + if model_info == None and spin_id == None: >>> + raise RelaxError("Either the model_info or spin_id >>> argument must be supplied.") >>> + elif model_info != None and spin_id != None: >>> + raise RelaxError("The model_info arg " + repr(model_info) >>> + " and spin_id arg " + repr(spin_id) + " clash. Only one should be >>> supplied.") >>> + >>> # Unpack the data. >>> spin_ids = model_info >>> - spins = spin_ids_to_containers(spin_ids) >>> + #spins = spin_ids_to_containers(spin_ids) >>> + >>> + spins_list = [] >>> + for spin_id in self.model_loop(): >>> + spins_list.append(spin_id[0]) >>> + >>> + spins = spin_ids_to_containers(spins_list) >>> >>> # The number of parameters for the cluster. >>> k = param_num(spins=spins) >>> >>> >>> _______________________________________________ >>> relax (http://www.nmr-relax.com) >>> >>> This is the relax-commits mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-commits >>> >>> _______________________________________________ >>> relax (http://www.nmr-relax.com) >>> >>> This is the relax-devel mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
