It is a crazy hysterical program... But oh so powerful for visualization!
I have only dreamt about such graphs, and now they are here.! I remember clearly your paper with the figures, and thought it was so awesome. Until now, I just got it to work with several points in one file. Thats fine for me now. Best Troels 2014-05-08 19:02 GMT+02:00 Edward d'Auvergne <[email protected]>: > Hi, > > To get this right, you need to do in in parts. First get the relax > code to produce a new tab for the each point. Only then, once you can > see these multiple tabs in the dx software, can you worry about > connecting it up in the dx program. That would then involve: > > 1) start by taking an existing OpenDX program, > 2) modify it manually in dx, > 3) save the program to a new name, > 4) use diff to compare the new and old programs. > > This needs to be done slowly, one change at a time! You will not be > able to do this all in one commit. Or at least I don't have the > ability to. > > Regards, > > Edward > > > > > On 8 May 2014 16:28, Edward d'Auvergne <[email protected]> wrote: >> Hi, >> >> The pipe_control/opendx.py change here doesn't do anything. As I >> mentioned previously >> (http://article.gmane.org/gmane.science.nmr.relax.devel/5680), without >> a little planning, you will run into problems with this change to >> lib/software/opendx/files.py! >> >> Regards, >> >> Edward >> >> >> On 8 May 2014 15:59, <[email protected]> wrote: >>> Author: tlinnet >>> Date: Thu May 8 15:59:36 2014 >>> New Revision: 23087 >>> >>> URL: http://svn.gna.org/viewcvs/relax?rev=23087&view=rev >>> Log: >>> Tried to make writing of the map.general file. >>> >>> task #7791: (https://gna.org/task/index.php?7791 ) the dx.map should accept >>> a list of list with values for points. >>> >>> Modified: >>> trunk/lib/software/opendx/files.py >>> trunk/pipe_control/opendx.py >>> >>> Modified: trunk/lib/software/opendx/files.py >>> URL: >>> http://svn.gna.org/viewcvs/relax/trunk/lib/software/opendx/files.py?rev=23087&r1=23086&r2=23087&view=diff >>> ============================================================================== >>> --- trunk/lib/software/opendx/files.py (original) >>> +++ trunk/lib/software/opendx/files.py Thu May 8 15:59:36 2014 >>> @@ -228,7 +228,7 @@ >>> file.write("// MODULE main\n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> + if num_points > 0: >>> file.write("\n") >>> file.write("// page assignment: Colour Space\torder=3, windowed=0, >>> showing=0\n") >>> file.write("// page assignment: ColourScene\t\torder=5, >>> windowed=0, showing=0\n") >>> @@ -259,64 +259,66 @@ >>> file.write(" // \n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> - file.write("\n") >>> - file.write(" // node Import[4]: x = 177, y = 62, inputs = 6, >>> label = %s\n" % point_file) >>> - file.write(" // input[1]: defaulting = 0, visible = 1, type = >>> 32, value = \"%s.general\"\n" % point_file) >>> - file.write(" // input[3]: defaulting = 1, visible = 1, type = >>> 32, value = \"general\"\n") >>> - file.write(" // page group: Glyph\n") >>> - file.write(" //\n") >>> - file.write("main_Import_4_out_1 = \n") >>> - file.write(" Import(\n") >>> - file.write(" main_Import_4_in_1,\n") >>> - file.write(" main_Import_4_in_2,\n") >>> - file.write(" main_Import_4_in_3,\n") >>> - file.write(" main_Import_4_in_4,\n") >>> - file.write(" main_Import_4_in_5,\n") >>> - file.write(" main_Import_4_in_6\n") >>> - file.write(" ) [instance: 4, cache: 1];\n") >>> - file.write(" // \n") >>> - file.write(" // node Glyph[2]: x = 201, y = 182, inputs = 7, >>> label = Glyph\n") >>> - file.write(" // input[2]: defaulting = 0, visible = 1, type = >>> 32, value = \"sphere\"\n") >>> - file.write(" // input[3]: defaulting = 1, visible = 1, type = >>> 5, value = 10.0\n") >>> - file.write(" // input[4]: defaulting = 0, visible = 1, type = >>> 5, value = %s\n" % sphere_size) >>> - file.write(" // input[5]: defaulting = 0, visible = 1, type = >>> 5, value = 0.0\n") >>> - file.write(" // page group: Glyph\n") >>> - file.write(" //\n") >>> - file.write("main_Glyph_2_out_1 = \n") >>> - file.write(" Glyph(\n") >>> - file.write(" main_Import_4_out_1,\n") >>> - file.write(" main_Glyph_2_in_2,\n") >>> - file.write(" main_Glyph_2_in_3,\n") >>> - file.write(" main_Glyph_2_in_4,\n") >>> - file.write(" main_Glyph_2_in_5,\n") >>> - file.write(" main_Glyph_2_in_6,\n") >>> - file.write(" main_Glyph_2_in_7\n") >>> - file.write(" ) [instance: 2, cache: 1];\n") >>> - file.write(" // \n") >>> - file.write(" // node Color[10]: x = 357, y = 278, inputs = 5, >>> label = Color\n") >>> - file.write(" // input[2]: defaulting = 0, visible = 1, type = >>> 8, value = [0 0 0]\n") >>> - file.write(" // input[3]: defaulting = 0, visible = 1, type = >>> 5, value = 1.0\n") >>> - file.write(" // page group: Glyph\n") >>> - file.write(" //\n") >>> - file.write("main_Color_10_out_1 = \n") >>> - file.write(" Color(\n") >>> - file.write(" main_Glyph_2_out_1,\n") >>> - file.write(" main_Color_10_in_2,\n") >>> - file.write(" main_Color_10_in_3,\n") >>> - file.write(" main_Color_10_in_4,\n") >>> - file.write(" main_Color_10_in_5\n") >>> - file.write(" ) [instance: 10, cache: 1];\n") >>> - file.write(" // \n") >>> - file.write(" // node Transmitter[1]: x = 352, y = 386, inputs = >>> 1, label = GreySphere\n") >>> - file.write(" // page group: Glyph\n") >>> - file.write(" //\n") >>> - file.write("GreySphere = main_Color_10_out_1;\n") >>> - file.write(" // \n") >>> - file.write(" // node Receiver[2]: x = 190, y = 350, inputs = 1, >>> label = GreySphere\n") >>> - file.write(" // page group: Grey Space\n") >>> - file.write(" //\n") >>> - file.write("main_Receiver_2_out_1[cache: 0] = GreySphere;\n") >>> + if num_points > 0: >>> + for i in range(num_points): >>> + i_point_file = "%s_%i"%(point_file, i) >>> + file.write("\n") >>> + file.write(" // node Import[4]: x = 177, y = 62, inputs = >>> 6, label = %s\n" % i_point_file) >>> + file.write(" // input[1]: defaulting = 0, visible = 1, type >>> = 32, value = \"%s.general\"\n" % i_point_file) >>> + file.write(" // input[3]: defaulting = 1, visible = 1, type >>> = 32, value = \"general\"\n") >>> + file.write(" // page group: Glyph\n") >>> + file.write(" //\n") >>> + file.write("main_Import_4_out_1 = \n") >>> + file.write(" Import(\n") >>> + file.write(" main_Import_4_in_1,\n") >>> + file.write(" main_Import_4_in_2,\n") >>> + file.write(" main_Import_4_in_3,\n") >>> + file.write(" main_Import_4_in_4,\n") >>> + file.write(" main_Import_4_in_5,\n") >>> + file.write(" main_Import_4_in_6\n") >>> + file.write(" ) [instance: 4, cache: 1];\n") >>> + file.write(" // \n") >>> + file.write(" // node Glyph[2]: x = 201, y = 182, inputs = >>> 7, label = Glyph\n") >>> + file.write(" // input[2]: defaulting = 0, visible = 1, type >>> = 32, value = \"sphere\"\n") >>> + file.write(" // input[3]: defaulting = 1, visible = 1, type >>> = 5, value = 10.0\n") >>> + file.write(" // input[4]: defaulting = 0, visible = 1, type >>> = 5, value = %s\n" % sphere_size) >>> + file.write(" // input[5]: defaulting = 0, visible = 1, type >>> = 5, value = 0.0\n") >>> + file.write(" // page group: Glyph\n") >>> + file.write(" //\n") >>> + file.write("main_Glyph_2_out_1 = \n") >>> + file.write(" Glyph(\n") >>> + file.write(" main_Import_4_out_1,\n") >>> + file.write(" main_Glyph_2_in_2,\n") >>> + file.write(" main_Glyph_2_in_3,\n") >>> + file.write(" main_Glyph_2_in_4,\n") >>> + file.write(" main_Glyph_2_in_5,\n") >>> + file.write(" main_Glyph_2_in_6,\n") >>> + file.write(" main_Glyph_2_in_7\n") >>> + file.write(" ) [instance: 2, cache: 1];\n") >>> + file.write(" // \n") >>> + file.write(" // node Color[10]: x = 357, y = 278, inputs = >>> 5, label = Color\n") >>> + file.write(" // input[2]: defaulting = 0, visible = 1, type >>> = 8, value = [0 0 0]\n") >>> + file.write(" // input[3]: defaulting = 0, visible = 1, type >>> = 5, value = 1.0\n") >>> + file.write(" // page group: Glyph\n") >>> + file.write(" //\n") >>> + file.write("main_Color_10_out_1 = \n") >>> + file.write(" Color(\n") >>> + file.write(" main_Glyph_2_out_1,\n") >>> + file.write(" main_Color_10_in_2,\n") >>> + file.write(" main_Color_10_in_3,\n") >>> + file.write(" main_Color_10_in_4,\n") >>> + file.write(" main_Color_10_in_5\n") >>> + file.write(" ) [instance: 10, cache: 1];\n") >>> + file.write(" // \n") >>> + file.write(" // node Transmitter[1]: x = 352, y = 386, >>> inputs = 1, label = GreySphere\n") >>> + file.write(" // page group: Glyph\n") >>> + file.write(" //\n") >>> + file.write("GreySphere = main_Color_10_out_1;\n") >>> + file.write(" // \n") >>> + file.write(" // node Receiver[2]: x = 190, y = 350, inputs >>> = 1, label = GreySphere\n") >>> + file.write(" // page group: Grey Space\n") >>> + file.write(" //\n") >>> + file.write("main_Receiver_2_out_1[cache: 0] = GreySphere;\n") >>> >>> # Common code. >>> file.write("\n") >>> @@ -517,7 +519,7 @@ >>> file.write(" // \n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> + if num_points > 0: >>> file.write("\n") >>> file.write(" // node Collect[8]: x = 293, y = 431, inputs = 2, >>> label = Collect\n") >>> file.write(" // page group: Grey Space\n") >>> @@ -541,7 +543,7 @@ >>> file.write(" // \n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> + if num_points > 0: >>> file.write("\n") >>> file.write("GreySpace = main_Collect_8_out_1;\n") >>> >>> @@ -636,7 +638,7 @@ >>> file.write(" // \n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> + if num_points > 0: >>> file.write("\n") >>> file.write(" // node Color[11]: x = 133, y = 278, inputs = 5, >>> label = Color\n") >>> file.write(" // input[2]: defaulting = 0, visible = 1, type = >>> 8, value = [1 0 0]\n") >>> @@ -773,7 +775,7 @@ >>> file.write(" // \n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> + if num_points > 0: >>> file.write("\n") >>> file.write(" // node Collect[12]: x = 293, y = 431, inputs = 2, >>> label = Collect\n") >>> file.write(" // page group: Colour Space\n") >>> @@ -797,7 +799,7 @@ >>> file.write(" // \n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> + if num_points > 0: >>> file.write("\n") >>> file.write("ColourSpace = main_Collect_12_out_1;\n") >>> >>> @@ -1035,29 +1037,33 @@ >>> file.write("}\n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> - file.write("\n") >>> - file.write("main_Import_4_in_1 = \"%s.general\";\n" % point_file) >>> - file.write("main_Import_4_in_2 = NULL;\n") >>> - file.write("main_Import_4_in_3 = NULL;\n") >>> - file.write("main_Import_4_in_4 = NULL;\n") >>> - file.write("main_Import_4_in_5 = NULL;\n") >>> - file.write("main_Import_4_in_6 = NULL;\n") >>> - file.write("main_Import_4_out_1 = NULL;\n") >>> - file.write("main_Glyph_2_in_2 = \"sphere\";\n") >>> - file.write("main_Glyph_2_in_3 = NULL;\n") >>> - file.write("main_Glyph_2_in_4 = %s;\n" % sphere_size) >>> - file.write("main_Glyph_2_in_5 = 0.0;\n") >>> - file.write("main_Glyph_2_in_6 = NULL;\n") >>> - file.write("main_Glyph_2_in_7 = NULL;\n") >>> - file.write("main_Glyph_2_out_1 = NULL;\n") >>> - file.write("main_Color_10_in_2 = [0 0 0];\n") >>> - file.write("main_Color_10_in_3 = 1.0;\n") >>> - file.write("main_Color_10_in_4 = NULL;\n") >>> - file.write("main_Color_10_in_5 = NULL;\n") >>> - file.write("main_Color_10_out_1 = NULL;\n") >>> - file.write("main_Transmitter_1_out_1 = NULL;\n") >>> - file.write("main_Receiver_2_out_1 = NULL;\n") >>> + if num_points > 0: >>> + if num_points > 0: >>> + for i in range(num_points): >>> + i_point_file = "%s_%i"%(point_file, i) >>> + >>> + file.write("\n") >>> + file.write("main_Import_4_in_1 = \"%s.general\";\n" % >>> i_point_file) >>> + file.write("main_Import_4_in_2 = NULL;\n") >>> + file.write("main_Import_4_in_3 = NULL;\n") >>> + file.write("main_Import_4_in_4 = NULL;\n") >>> + file.write("main_Import_4_in_5 = NULL;\n") >>> + file.write("main_Import_4_in_6 = NULL;\n") >>> + file.write("main_Import_4_out_1 = NULL;\n") >>> + file.write("main_Glyph_2_in_2 = \"sphere\";\n") >>> + file.write("main_Glyph_2_in_3 = NULL;\n") >>> + file.write("main_Glyph_2_in_4 = %s;\n" % sphere_size) >>> + file.write("main_Glyph_2_in_5 = 0.0;\n") >>> + file.write("main_Glyph_2_in_6 = NULL;\n") >>> + file.write("main_Glyph_2_in_7 = NULL;\n") >>> + file.write("main_Glyph_2_out_1 = NULL;\n") >>> + file.write("main_Color_10_in_2 = [0 0 0];\n") >>> + file.write("main_Color_10_in_3 = 1.0;\n") >>> + file.write("main_Color_10_in_4 = NULL;\n") >>> + file.write("main_Color_10_in_5 = NULL;\n") >>> + file.write("main_Color_10_out_1 = NULL;\n") >>> + file.write("main_Transmitter_1_out_1 = NULL;\n") >>> + file.write("main_Receiver_2_out_1 = NULL;\n") >>> >>> # Common code. >>> file.write("\n") >>> @@ -1125,7 +1131,7 @@ >>> file.write("main_Collect_7_out_1 = NULL;\n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> + if num_points > 0: >>> file.write("\n") >>> file.write("main_Collect_8_out_1 = NULL;\n") >>> >>> @@ -1164,7 +1170,7 @@ >>> file.write("main_AutoAxes_2_out_1 = NULL;\n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> + if num_points > 0: >>> file.write("\n") >>> file.write("main_Color_11_in_2 = [1 0 0];\n") >>> file.write("main_Color_11_in_3 = 1.0;\n") >>> @@ -1205,7 +1211,7 @@ >>> file.write("main_Collect_11_out_1 = NULL;\n") >>> >>> # Include the sphere. >>> - if num_points == 1: >>> + if num_points > 0: >>> file.write("\n") >>> file.write("main_Collect_12_out_1 = NULL;\n") >>> >>> >>> Modified: trunk/pipe_control/opendx.py >>> URL: >>> http://svn.gna.org/viewcvs/relax/trunk/pipe_control/opendx.py?rev=23087&r1=23086&r2=23087&view=diff >>> ============================================================================== >>> --- trunk/pipe_control/opendx.py (original) >>> +++ trunk/pipe_control/opendx.py Thu May 8 15:59:36 2014 >>> @@ -175,6 +175,7 @@ >>> >>> # Create the OpenDX .general and data files for the given point. >>> if self.num_points == 1: >>> + file_prefix = "%s_0"%(self.point_file) >>> write_point(file_prefix=self.point_file, dir=self.dir, >>> inc=self.inc, point=self.point, bounds=self.bounds, N=self.n) >>> >>> # Generate the OpenDX .general and data files for each point. >>> >>> >>> _______________________________________________ >>> relax (http://www.nmr-relax.com) >>> >>> This is the relax-commits mailing list >>> [email protected] >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-commits > > _______________________________________________ > relax (http://www.nmr-relax.com) > > This is the relax-devel mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-devel mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-devel
