URL:
<http://gna.org/bugs/?22069>
Summary: Failure of the structure.delete user function with
"AttributeError: Internal instance has no attribute 'helices'".
Project: relax
Submitted by: bugman
Submitted on: Thu 22 May 2014 12:25:24 PM UTC
Category: relax's source code
Specific analysis category: None
Priority: 5 - Normal
Severity: 3 - Normal
Status: None
Assigned to: bugman
Originator Name:
Originator Email:
Open/Closed: Open
Release: 3.2.0
Discussion Lock: Any
Operating System: All systems
_______________________________________________________
Details:
The following user function calls, when running relax in the prompt UI mode
from the base directory, will cause the failure:
pipe.create('structure.delete fail', 'N-state')
structure.read_pdb('1J7P_1st_NH_rot.pdb',
dir='test_suite/shared_data/frame_order/cam/')
structure.delete(atom_id='@CA')
The error is:
relax> structure.delete(atom_id='@CA', verbosity=1, spin_info=True)
Deleting structural data from the current pipe.
Traceback (most recent call last):
File "/data/relax/relax-trunk/multi/processor.py", line 494, in run
self.callback.init_master(self)
File "/data/relax/relax-trunk/multi/__init__.py", line 318, in
default_init_master
self.master.run()
File "/data/relax/relax-trunk/relax.py", line 194, in run
self.interpreter.run(self.script_file)
File "/data/relax/relax-trunk/prompt/interpreter.py", line 275, in run
return run_script(intro=self.__intro_string, local=locals(),
script_file=script_file, show_script=self.__show_script,
raise_relax_error=self.__raise_relax_error)
File "/data/relax/relax-trunk/prompt/interpreter.py", line 569, in
run_script
return console.interact(intro, local, script_file,
show_script=show_script, raise_relax_error=raise_relax_error)
File "/data/relax/relax-trunk/prompt/interpreter.py", line 468, in
interact_script
exec_script(script_file, local)
File "/data/relax/relax-trunk/prompt/interpreter.py", line 347, in
exec_script
runpy.run_module(module, globals)
File "/usr/lib64/python2.7/runpy.py", line 180, in run_module
fname, loader, pkg_name)
File "/usr/lib64/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File "/data/relax/relax-trunk/fail.py", line 10, in <module>
structure.delete(atom_id='@CA')
File "/data/relax/relax-trunk/prompt/uf_objects.py", line 223, in __call__
self._backend(*new_args, **uf_kargs)
File "/data/relax/relax-trunk/pipe_control/structure/main.py", line 314, in
delete
cdp.structure.delete(atom_id=atom_id, verbosity=verbosity)
File "/data/relax/relax-trunk/lib/structure/internal/object.py", line 1583,
in delete
for i in range(len(self.helices)):
AttributeError: Internal instance has no attribute 'helices'
_______________________________________________________
Reply to this item at:
<http://gna.org/bugs/?22069>
_______________________________________________
Message sent via/by Gna!
http://gna.org/
_______________________________________________
relax (http://www.nmr-relax.com)
This is the relax-devel mailing list
[email protected]
To unsubscribe from this list, get a password
reminder, or change your subscription options,
visit the list information page at
https://mail.gna.org/listinfo/relax-devel
