Hi Jack,
Of course, if this can be of any help, I could test the fink versions of
relax on my own system...
Cheers,
Séb :)
On 11-06-15 5:49 PM, Edward d'Auvergne wrote:
Hi Jack,
Thank you for your work with fink! Maybe Seb can help you with
testing. If there is anything which could be added to the sconstruct
scripts, please say and I can do that. If it can be worked out how to
handle this, via darwin version checking or another method, it would
be good to integrate it directly into the source repository so that it
is easy to build relax for fink for future releases.
I would also not worry about packaging relax 1.3.10 for fink as Seb
identified an important bug in the graphical interface which I have
recently fixed. It would be better to wait for relax 1.3.11. One
other problem might be the wxPython dependency for the GUI as well.
Note I have removed the old Scientific Python dependency.
Cheers,
Edward
On 15 June 2011 17:41, Jack Howarth<howa...@bromo.med.uc.edu> wrote:
On Wed, Jun 15, 2011 at 05:27:04PM +0200, Edward d'Auvergne wrote:
Hi,
Not a problem. Unfortunately the relax version in fink is quite old.
That version is 1.3.4
(http://pdb.finkproject.org/pdb/browse.php?name=relax). You will
therefore have to use the source code releases
(http://www.nmr-relax.com/download.html#Source_code_release). These
will require a bit more work. Unfortunately the person who was
volunteering to keep relax up to date in fink, Jack Howarth, has been
busy or has moved on to other things. I don't have a Mac myself, so
sadly I cannot look after the distribution of relax on Macs.
For the source distribution, if you would like to have access to the
R1 and R2 curve-fitting, then the C modules will need to be compiled.
How to do that is described on the download page at
http://nmr-relax.com. Note that there has recently been a bug found
on Mac OS X in the GUI (http://gna.org/bugs/?18197, or see the thread
starting at https://mail.gna.org/public/relax-devel/2011-06/msg00113.html).
I fixed this bug just this week, but no new version of relax has been
released since then. Therefore I would recommend, at least for now,
that you go for the cutting edge code straight from the relax
repositories. How to do that is described on the download page at
http://www.nmr-relax.com/download.html#Source_code_repository. I hope
this helps.
Regards,
Edward
Edward,
I am trying to get the relax-py in fink unstable updated to 1.3.10.
In the meanwhile, users can download the three files for minfx-py-1.0.3-1
and relax-py-1.3.10-1 from...
https://sourceforge.net/tracker/?func=detail&aid=3315120&group_id=17203&atid=414256
One potential hold up is that relax doesn't seem to build properly on 10.4
and some of the fink maintainers are keen to maintain that support. It has
been proposed that scons needs to see...
mport os
env = Environment(ENV = {'PATH' : os.environ['PATH']})
for the MACOSX_DEPLOYMENT_TARGET to be set (although that is actually
a depreciated feature and should no longer be used on recent darwin).
Jack
ps Sorry it took so long to get back to you. I've been busy converting
fink cvs to default to build using clang for Lion.
On 15 June 2011 17:06, Nico van Nuland<nvnul...@vub.ac.be> wrote:
Hi Edward
Thanks for your fast reply!
I am working on a Mac, and used " fink install relax-py25".
I guess with that I installed the last version doing this, or not?
When I type "relax --info" I get a similar error: RelaxError: no such option
All best, Nico
PS I am able to run relax, for instance fro spectral density mapping, but
other analysis options are more complicated, so I would like to use the
graphical interface!
On 15/06/11 16:40, "Edward d'Auvergne"<edw...@nmr-relax.com> wrote:
Dear Nico,
Welcome to the relax mailing lists. The problem is likely to be that
you are using an old version of relax. You can see when you start
relax without the '-g' option, the version must be greater than 1.3.9
for the graphical interface. If this is not the case, have a look at
http://www.nmr-relax.com/download.html. Otherwise there is some major
issue, in which case could you copy and paste the output of:
$ relax --info
Cheers,
Edward
On 15 June 2011 16:27, Nico van Nuland<nvnul...@vub.ac.be> wrote:
Hi
I am trying to run relax with the graphical user interface, but I get the
following error when I typ ³relax g²:
RelaxError: no such option: -g
Can someone explain me what is wrong, why it doesn¹t work and have a
solution?
Many thanks, Nico
Dr. Ir. Nico van Nuland, PhD
VIB group leader Biomolecular NMR
Molecular Recognition Unit
Structural Biology Brussels - VUB / VIB
Jean Jeener NMR Centre
Building E, 4th Floor
Pleinlaan 2
1050 Brussels
tel. office: +32 (0)2 6293553
tel. NMR: +32 (0)2 6291152
gsm: +32 (0)497579217
fax: +32 (0)2 6291963
nvnul...@vub.ac.be
http://www.more.vub.ac.be/
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--
Sébastien Morin, Ph.D.
Postdoctoral Fellow, S. Grzesiek NMR Laboratory
Department of Structural Biology
Biozentrum, Universität Basel
Klingelbergstrasse 70
4056 Basel
Switzerland
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