Hi Stefano, It's no problem at all. For bugs, it is best to create a bug report using the link http://gna.org/bugs/?func=additem&group=relax. With a bug report, all the files required to reproduce the bug can be attached (ideally truncated to 1-2 spins). If I can reproduce the bug with truncated data, in most cases I can then create a system test and have a fix within about 5 to 10 minutes.
In this case here, it looks like an improperly defined sheet secondary structure element in the PDB. The error is the IndexError, all text after that can be ignored. With the bug report and attached PDB file, I can have a look and see if I can make the relax PDB reader more fail safe. This is a constant battle due to the huge number of programs which create corrupted PDB files! It's really not hard to follow the PDB standard, but there are just too many lazy developers out there. Regards, Edward On 18 March 2014 10:13, Stefano Luciano Ciurli <stefano.ciu...@unibo.it> wrote: > Hello, > I hope I do not bug you too often, but I keep receiving error messages. Here > is one, upon loading a PDB file generated using Chimera, and no spins are > loaded in the spin viewer. I am using 3.1.7. > Stefano > > Internal relax PDB parser. > Opening the file '/Users/stefano/Desktop/13-BpUreE-NMR/Manuscript/Figure 6,7 > - Dynamics/relax/dimer_H.pdb' for reading. > Traceback (most recent call last): > File "gui/interpreter.pyc", line 303, in run > File "pipe_control/structure/main.pyc", line 722, in read_pdb > File "lib/structure/internal/object.pyc", line 1813, in load_pdb > File "lib/structure/internal/object.pyc", line 500, in _parse_pdb_ss > File "lib/structure/pdb_read.pyc", line 1221, in sheet > IndexError: string index out of range > Exception in thread Thread-1: > Traceback (most recent call last): > File "threading.pyc", line 808, in __bootstrap_inner > File "gui/interpreter.pyc", line 323, in run > File "status.pyc", line 369, in release > File "status.pyc", line 413, in notify > File "gui/analyses/auto_model_free.pyc", line 276, in activate > File > "/Applications/relax.app/Contents/Resources/lib/python2.7/wx/_core.py", line > 16769, in CallAfter > AssertionError: callableObj is not callable _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list relax-users@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
