Github user felixcheung commented on a diff in the pull request: https://github.com/apache/spark/pull/16214#discussion_r91766006 --- Diff: examples/src/main/r/native-r-package.R --- @@ -0,0 +1,68 @@ +# +# Licensed to the Apache Software Foundation (ASF) under one or more +# contributor license agreements. See the NOTICE file distributed with +# this work for additional information regarding copyright ownership. +# The ASF licenses this file to You under the Apache License, Version 2.0 +# (the "License"); you may not use this file except in compliance with +# the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +# This example illustrates how to install third-party R packages to executors +# in your SparkR jobs distributed by "spark.lapply". +# +# Note: This example will install packages to a temporary directory on your machine. +# The directory will be removed automatically when the example exit. +# You environment should be connected to internet to run this example, +# otherwise, you should change "repos" to your private repository url. +# And the environment need to have necessary tools such as gcc to compile +# and install R package "e1071". +# +# To run this example use +# ./bin/spark-submit examples/src/main/r/native-r-package.R + +# Load SparkR library into your R session +library(SparkR) + +# Initialize SparkSession +sparkR.session(appName = "SparkR-native-r-package-example") + +# $example on$ +# The directory where the third-party R packages are installed. +libDir <- paste0(tempdir(), "/", "Rlib") +dir.create(libDir) + +# Downloaded e1071 package source code to a directory +packagesDir <- paste0(tempdir(), "/", "packages") +dir.create(packagesDir) +download.packages("e1071", packagesDir, repos = "https://cran.r-project.org") +filename <- list.files(packagesDir, "^e1071") +packagesPath <- file.path(packagesDir, filename) +# Add the third-party R package to be downloaded with this Spark job on every node. +spark.addFile(packagesPath) + +path <- spark.getSparkFiles(filename) +costs <- exp(seq(from = log(1), to = log(1000), length.out = 5)) +train <- function(cost) { + if("e1071" %in% rownames(installed.packages(lib = libDir)) == FALSE) { + install.packages(path, repos = NULL, type = "source") --- End diff -- re: comment [here](https://github.com/apache/spark/pull/16214#discussion_r91562425) if you already have the package content from sparkFiles you do not need to call `install.packages()`, which I think would be better without it.
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