Github user jkbradley commented on a diff in the pull request:

    https://github.com/apache/spark/pull/16883#discussion_r103331212
  
    --- Diff: 
mllib/src/main/scala/org/apache/spark/ml/feature/StringIndexer.scala ---
    @@ -163,25 +190,28 @@ class StringIndexerModel (
         }
         transformSchema(dataset.schema, logging = true)
     
    +    val metadata = NominalAttribute.defaultAttr
    +      .withName($(outputCol)).withValues(labels).toMetadata()
    --- End diff --
    
    withValues should include a special field for invalid, if we are keeping 
invalid labels.  How about calling that field "_invalidLabels" (and defining 
this constant in the StringIndexer object)?


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