The problem is because:
> In version 1.8.8 a change has taken place about handling files
> with unknown / unsupported extension. Till that version they were seen as
> C-like files. In version 1.8.8 and up they are skipped, but it is possible
> to use your own extension and map it to a supported version.
Thus files
doc/librpm/Doxyheader
doc/hacking/Doxyheader
are skipped and that is why "Modules" are missing.
To solve the problem:
Add to both files "Doxyheader" an extension. According to the extension, change
files "hacking.doxy.in" and "librpm.doxy.in" as it is in change.diff (for
extension "xxx").
Another option is to configure "hacking.doxy.in" and "librpm.doxy.in" to
process files without extension (no_extension). Doxygen would start to go
through all files without extension - README, INSTALL, ... as C files, which
could lead to undesired results. Therefore I prefer the first option.
[change.txt](https://github.com/rpm-software-management/rpm/files/753006/change.txt)
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