Revision: 642
http://rpy.svn.sourceforge.net/rpy/?rev=642&view=rev
Author: lgautier
Date: 2008-08-25 09:20:41 +0000 (Mon, 25 Aug 2008)
Log Message:
-----------
rinterface:
- initEmbeddedR() renamed to initr()
- endEmbeddedR() renamed to endr()
Modified Paths:
--------------
branches/rpy_nextgen/NEWS
branches/rpy_nextgen/doc/source/rinterface.rst
branches/rpy_nextgen/rpy/rinterface/rinterface.c
branches/rpy_nextgen/rpy/rinterface/tests/test_EmbeddedR.py
branches/rpy_nextgen/rpy/rinterface/tests/test_Sexp.py
branches/rpy_nextgen/rpy/rinterface/tests/test_SexpClosure.py
branches/rpy_nextgen/rpy/rinterface/tests/test_SexpEnvironment.py
branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVector.py
branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVectorNumeric.py
branches/rpy_nextgen/rpy/robjects/__init__.py
branches/rpy_nextgen/rpy/rpy_classic.py
Modified: branches/rpy_nextgen/NEWS
===================================================================
--- branches/rpy_nextgen/NEWS 2008-08-25 07:08:15 UTC (rev 641)
+++ branches/rpy_nextgen/NEWS 2008-08-25 09:20:41 UTC (rev 642)
@@ -46,7 +46,11 @@
- R objects of type EXPRSXP are now handled as vectors (... but this may
change again)
+- :func:`initEmbeddedR` renamed to :func:`initr`
+- :func:`endEmbeddedR` renamed to :func:`endr`
+
+
:mod:`rpy2.robjects`:
- :class:`R` remains a singleton, but does not throw an exception when
multiple instances are requested
Modified: branches/rpy_nextgen/doc/source/rinterface.rst
===================================================================
--- branches/rpy_nextgen/doc/source/rinterface.rst 2008-08-25 07:08:15 UTC
(rev 641)
+++ branches/rpy_nextgen/doc/source/rinterface.rst 2008-08-25 09:20:41 UTC
(rev 642)
@@ -29,20 +29,20 @@
--------------
One has to initialize R before much can be done.
-The function :func:`initEmbeddedR` lets one initialize
+The function :func:`initr` lets one initialize
the embedded R.
-This is done with the function :meth:`initEmbeddedR`.
+This is done with the function :meth:`initr`.
-.. autofunction:: initEmbeddedR()
+.. autofunction:: initr()
->>> rinterface.initEmbeddedR()
+>>> rinterface.initr()
Initialization should only be performed once.
To avoid unpredictable results when using the embedded R,
-subsequent calls to :func:`initEmbeddedR` will not have any effect.
+subsequent calls to :func:`initr` will not have any effect.
Parameters for the initialization are in the module variable
`initOptions`.
@@ -51,7 +51,7 @@
single: initialize R_HOME
.. note::
- If calling :func:`initEmbeddedR` returns an error stating that
+ If calling :func:`initr` returns an error stating that
:envvar:`R_HOME` is not defined, you should either have the :program:`R`
executable in
your path (:envvar:`PATH` on unix-alikes, or :envvar:`Path` on Microsoft
Windows) or
have the environment variable :envvar:`R_HOME` defined.
Modified: branches/rpy_nextgen/rpy/rinterface/rinterface.c
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/rinterface.c 2008-08-25 07:08:15 UTC
(rev 641)
+++ branches/rpy_nextgen/rpy/rinterface/rinterface.c 2008-08-25 09:20:41 UTC
(rev 642)
@@ -2341,9 +2341,9 @@
/* --- List of functions defined in the module --- */
static PyMethodDef EmbeddedR_methods[] = {
- {"initEmbeddedR", (PyCFunction)EmbeddedR_init, METH_NOARGS,
+ {"initr", (PyCFunction)EmbeddedR_init, METH_NOARGS,
EmbeddedR_init_doc},
- {"endEmbeddedR", (PyCFunction)EmbeddedR_end, METH_O,
+ {"endr", (PyCFunction)EmbeddedR_end, METH_O,
EmbeddedR_end_doc},
{"setWriteConsole", (PyCFunction)EmbeddedR_setWriteConsole, METH_VARARGS,
EmbeddedR_setWriteConsole_doc},
Modified: branches/rpy_nextgen/rpy/rinterface/tests/test_EmbeddedR.py
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/tests/test_EmbeddedR.py 2008-08-25
07:08:15 UTC (rev 641)
+++ branches/rpy_nextgen/rpy/rinterface/tests/test_EmbeddedR.py 2008-08-25
09:20:41 UTC (rev 642)
@@ -1,7 +1,7 @@
import unittest
import rpy2.rinterface as rinterface
-rinterface.initEmbeddedR()
+rinterface.initr()
class EmbeddedRTestCase(unittest.TestCase):
def testSetWriteConsole(self):
@@ -28,9 +28,9 @@
def testCallErrorWhenEndedR(self):
self.assertTrue(False) # worked when tested, but calling endEmbeddedR
causes trouble
t = rinterface.baseNameSpaceEnv['date']
- rinterface.endEmbeddedR(1)
+ rinterface.endr(1)
self.assertRaises(RuntimeError, t)
- rinterface.initEmbeddedR()
+ rinterface.initr()
class ObjectDispatchTestCase(unittest.TestCase):
Modified: branches/rpy_nextgen/rpy/rinterface/tests/test_Sexp.py
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/tests/test_Sexp.py 2008-08-25
07:08:15 UTC (rev 641)
+++ branches/rpy_nextgen/rpy/rinterface/tests/test_Sexp.py 2008-08-25
09:20:41 UTC (rev 642)
@@ -1,15 +1,10 @@
import unittest
import rpy2.rinterface as rinterface
-rinterface.initEmbeddedR()
+rinterface.initr()
class SexpTestCase(unittest.TestCase):
- #def setUpt(self):
- # rinterface.initEmbeddedR("foo", "--no-save")
- #def tearDown(self):
- # rinterface.endEmbeddedR(1);
-
def testNew_invalid(self):
x = "a"
Modified: branches/rpy_nextgen/rpy/rinterface/tests/test_SexpClosure.py
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/tests/test_SexpClosure.py
2008-08-25 07:08:15 UTC (rev 641)
+++ branches/rpy_nextgen/rpy/rinterface/tests/test_SexpClosure.py
2008-08-25 09:20:41 UTC (rev 642)
@@ -2,15 +2,10 @@
import rpy2.rinterface as rinterface
import rpy2.rlike.container as rlc
-rinterface.initEmbeddedR()
+rinterface.initr()
class SexpClosureTestCase(unittest.TestCase):
- #def setUp(self):
- # rinterface.initEmbeddedR("foo", "--no-save")
- #def tearDown(self):
- # rinterface.endEmbeddedR(1);
-
def testNew(self):
x = "a"
self.assertRaises(ValueError, rinterface.SexpClosure, x)
Modified: branches/rpy_nextgen/rpy/rinterface/tests/test_SexpEnvironment.py
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/tests/test_SexpEnvironment.py
2008-08-25 07:08:15 UTC (rev 641)
+++ branches/rpy_nextgen/rpy/rinterface/tests/test_SexpEnvironment.py
2008-08-25 09:20:41 UTC (rev 642)
@@ -1,15 +1,10 @@
import unittest
import rpy2.rinterface as rinterface
-rinterface.initEmbeddedR()
+rinterface.initr()
class SexpEnvironmentTestCase(unittest.TestCase):
- #def setUpt(self):
- # rinterface.initEmbeddedR("foo", "--vanilla", "--no-save")
- #def tearDown(self):
- # rinterface.endEmbeddedR(0);
-
def testNew(self):
sexp = rinterface.globalEnv
sexp_new = rinterface.SexpEnvironment(sexp)
Modified: branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVector.py
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVector.py
2008-08-25 07:08:15 UTC (rev 641)
+++ branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVector.py
2008-08-25 09:20:41 UTC (rev 642)
@@ -2,7 +2,7 @@
import sys
import rpy2.rinterface as ri
-ri.initEmbeddedR()
+ri.initr()
def floatEqual(x, y, epsilon = 0.00000001):
return abs(x - y) < epsilon
@@ -28,22 +28,17 @@
self.assertTrue(ok)
class SexpVectorTestCase(unittest.TestCase):
- #def setUpt(self):
- # ri.initEmbeddedR("foo", "--no-save")
- #def tearDown(self):
- # ri.endEmbeddedR(1);
-
def testMissinfType(self):
self.assertRaises(ValueError, ri.SexpVector, [2, ])
#FIXME: end and initializing again causes currently a lot a trouble...
def testNewWithoutInit(self):
self.assertTrue(False) # worked when tested, but calling endEmbeddedR
causes trouble
- ri.endEmbeddedR(1)
+ ri.endr(1)
self.assertRaises(RuntimeError, ri.SexpVector, [1,2], ri.INTSXP)
#FIXME: trouble... does not initialize R when failing the test
- ri.initEmbeddedR()
+ ri.initr()
def testNewBool(self):
sexp = ri.SexpVector([True, ], ri.LGLSXP)
Modified: branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVectorNumeric.py
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVectorNumeric.py
2008-08-25 07:08:15 UTC (rev 641)
+++ branches/rpy_nextgen/rpy/rinterface/tests/test_SexpVectorNumeric.py
2008-08-25 09:20:41 UTC (rev 642)
@@ -10,7 +10,7 @@
hasNumpy = False
-rinterface.initEmbeddedR()
+rinterface.initr()
def floatEqual(x, y, epsilon = 0.00000001):
return abs(x - y) < epsilon
Modified: branches/rpy_nextgen/rpy/robjects/__init__.py
===================================================================
--- branches/rpy_nextgen/rpy/robjects/__init__.py 2008-08-25 07:08:15 UTC
(rev 641)
+++ branches/rpy_nextgen/rpy/robjects/__init__.py 2008-08-25 09:20:41 UTC
(rev 642)
@@ -440,7 +440,7 @@
def __init__(self):
if R._instance is None:
- rinterface.initEmbeddedR()
+ rinterface.initr()
R._instance = self
else:
pass
Modified: branches/rpy_nextgen/rpy/rpy_classic.py
===================================================================
--- branches/rpy_nextgen/rpy/rpy_classic.py 2008-08-25 07:08:15 UTC (rev
641)
+++ branches/rpy_nextgen/rpy/rpy_classic.py 2008-08-25 09:20:41 UTC (rev
642)
@@ -42,7 +42,7 @@
# --- init R
-ri.initEmbeddedR()
+ri.initr()
class RPyException(Exception):
""" Generic exeception for RPy """
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