Hi all,
I would like to add that rpy2 seems to work but:
>>> from rpy2.rpy_classic import *
Segmentation fault: 11 (core dumped)
The problem is that I have so much code in rpy <2 that it would be
impossible to maintain it... (much of it is galaxy based...)
d
On Sep 5, 2008, at 5:53 PM, Davide Cittaro wrote:
Hi all, I've posted in the bug tracker too. BTW:
Hi all, I've installed R 2.7.1 on FreeBSD 6.3. After that I've
installed rpy1.0.3 with python 2.5. I have this error and it seems
I'm not the only one. I don't ask for a ready solution, although it
would be great, I just want somebody to help me to figure out what
this error means, I may try to fix it: >>> from rpy import * ***
caught segfault *** address 0x54d8, cause 'unknown' Traceback:
1: .Call("R_initMethodDispatch", as.environment(where), PACKAGE =
"methods") 2: initMethodDispatch(where) 3: ..First.lib(libname,
pkgName, env) 4: fun(...) 5: doTryCatch(return(expr), name,
parentenv, handler) 6: tryCatchOne(expr, names, parentenv,
handlers[[1]]) 7: tryCatchList(expr, classes, parentenv, handlers)
8: tryCatch(expr, error = function(e) { call <-
conditionCall(e) if (!is.null(call)) { if
(identical(call[[1]], quote(doTryCatch))) call <-
sys.call(-4) dcall <- deparse(call)[1] prefix <-
paste("Error in", dcall, ": ") LONG <- 75 msg <-
conditionMessage(e) sm <- strsplit(msg, "\n")[[1]] if
(14 + nchar(dcall, type = "w") + nchar(sm[1], type = "w")
> LONG) prefix <- paste(prefix, "\n ", sep
= "") } else prefix <- "Error : " msg <- paste(prefix,
conditionMessage(e), "\n", sep =
"") .Internal(seterrmessage(msg[1])) if (!silent &&
identical(getOption("show.error.messages"), TRUE))
{ cat(msg, file =
stderr()) .Internal(printDeferredWarnings()) }
invisible(structure(msg, class = "try-error"))}) 9:
try({ fun(...) NULL}) 10: runHook(".onLoad", package, env,
package.lib, package) 11: loadNamespace(package, c(which.lib.loc,
lib.loc), keep.source = keep.source) 12: doTryCatch(return(expr),
name, parentenv, handler) 13: tryCatchOne(expr, names, parentenv,
handlers[[1]]) 14: tryCatchList(expr, classes, parentenv, handlers)
15: tryCatch(expr, error = function(e) { call <-
conditionCall(e) if (!is.null(call)) { if
(identical(call[[1]], quote(doTryCatch))) call <-
sys.call(-4) dcall <- deparse(call)[1] prefix <-
paste("Error in", dcall, ": ") LONG <- 75 msg <-
conditionMessage(e) sm <- strsplit(msg, "\n")[[1]] if
(14 + nchar(dcall, type = "w") + nchar(sm[1], type = "w")
> LONG) prefix <- paste(prefix, "\n ", sep
= "") } else prefix <- "Error : " msg <- paste(prefix,
conditionMessage(e), "\n", sep =
"") .Internal(seterrmessage(msg[1])) if (!silent &&
identical(getOption("show.error.messages"), TRUE))
{ cat(msg, file =
stderr()) .Internal(printDeferredWarnings()) }
invisible(structure(msg, class = "try-error"))}) 16: try({ ns <-
loadNamespace(package, c(which.lib.loc, lib.loc), keep.source =
keep.source) dataPath <- file.path(which.lib.loc, package,
"data") env <- attachNamespace(ns, pos = pos, dataPath =
dataPath)}) 17: library(package, lib.loc = lib.loc, character.only =
TRUE, logical.return = TRUE, warn.conflicts = warn.conflicts,
keep.source = keep.source, version = version) 18:
require("methods", quietly = TRUE, warn.conflicts = FALSE,
character.only = TRUE, save = FALSE) 19: .OptRequireMethods()
Possible actions: 1: abort (with core dump, if enabled) 2: normal R
exit 3: exit R without saving workspace 4: exit R saving workspace
Selection: 2
/*
Davide Cittaro
Cogentech - Consortium for Genomic Technologies
via adamello, 16
20139 Milano
Italy
tel.: +39(02)574303007
e-mail: [EMAIL PROTECTED]
*/
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