Revision: 668
http://rpy.svn.sourceforge.net/rpy/?rev=668&view=rev
Author: lgautier
Date: 2008-10-29 20:39:25 +0000 (Wed, 29 Oct 2008)
Log Message:
-----------
doc:
- still editing
rpy_classic:
- added long-missing tests (although coverage is quite low)
rinterface:
- fixed docstring
robjects:
- added docstrings
Modified Paths:
--------------
branches/rpy_nextgen/NEWS
branches/rpy_nextgen/doc/source/robjects.rst
branches/rpy_nextgen/rpy/rinterface/__init__.py
branches/rpy_nextgen/rpy/robjects/__init__.py
branches/rpy_nextgen/rpy/tests.py
Added Paths:
-----------
branches/rpy_nextgen/rpy/tests_rpy_classic.py
Modified: branches/rpy_nextgen/NEWS
===================================================================
--- branches/rpy_nextgen/NEWS 2008-10-29 09:38:54 UTC (rev 667)
+++ branches/rpy_nextgen/NEWS 2008-10-29 20:39:25 UTC (rev 668)
@@ -1,13 +1,7 @@
SVN
===
-Changes
--------
-:mod:`rpy2.robjects`:
-
-- Constructor for :class:`rpy2.robjects.RDataFrame` checks that R lists are
data.frames (not all lists are data.frame)
-
New features
------------
@@ -29,6 +23,9 @@
- does not alias :class:`rinterface.StrSexpVector`,
:class:`rinterface.IntSexpVector`, :class:`rinterface.FloatSexpVector` anymore
+- Constructor for :class:`rpy2.robjects.RDataFrame` checks that R lists are
data.frames (not all lists are data.frame)
+
+
Bugs fixed
----------
@@ -37,6 +34,7 @@
- __pow__ was missing from the delegator object for robjects.RVector (while
the documentation was claiming it was there) # bug report by Robert Nuske
- Earlier change from Sexp.typeof() to getter Sexp.typeof was not reflected in
:mod:`rpy2.rpy_classic` # bug report by Robert Denham
+
Release 2.0.0b1
===============
Modified: branches/rpy_nextgen/doc/source/robjects.rst
===================================================================
--- branches/rpy_nextgen/doc/source/robjects.rst 2008-10-29 09:38:54 UTC
(rev 667)
+++ branches/rpy_nextgen/doc/source/robjects.rst 2008-10-29 20:39:25 UTC
(rev 668)
@@ -274,7 +274,7 @@
.. note::
The boolean operator ``not`` cannot be redefined in Python (at least up to
- version 2.5), and its behavior could be made to mimic R's behavior
+ version 2.5), and its behavior could not be made to mimic R's behavior
.. index::
single: names; robjects
Modified: branches/rpy_nextgen/rpy/rinterface/__init__.py
===================================================================
--- branches/rpy_nextgen/rpy/rinterface/__init__.py 2008-10-29 09:38:54 UTC
(rev 667)
+++ branches/rpy_nextgen/rpy/rinterface/__init__.py 2008-10-29 20:39:25 UTC
(rev 668)
@@ -60,7 +60,7 @@
class BoolSexpVector(SexpVector):
"""
- Vector of floats.
+ Vector of booleans (logical in R terminology).
"""
def __init__(self, v):
super(BoolSexpVector, self).__init__(v, LGLSXP)
Modified: branches/rpy_nextgen/rpy/robjects/__init__.py
===================================================================
--- branches/rpy_nextgen/rpy/robjects/__init__.py 2008-10-29 09:38:54 UTC
(rev 667)
+++ branches/rpy_nextgen/rpy/robjects/__init__.py 2008-10-29 20:39:25 UTC
(rev 668)
@@ -274,21 +274,25 @@
return res
class StrVector(RVector):
+ """ Vector of string elements """
def __init__(self, obj):
obj = rinterface.StrSexpVector(obj)
super(StrVector, self).__init__(obj)
class IntVector(RVector):
+ """ Vector of integer elements """
def __init__(self, obj):
obj = rinterface.IntSexpVector(obj)
super(IntVector, self).__init__(obj)
class BoolVector(RVector):
+ """ Vector of boolean (logical) elements """
def __init__(self, obj):
obj = rinterface.BoolSexpVector(obj)
super(BoolVector, self).__init__(obj)
class FloatVector(RVector):
+ """ Vector of float (double) elements """
def __init__(self, obj):
obj = rinterface.FloatSexpVector(obj)
super(FloatVector, self).__init__(obj)
Modified: branches/rpy_nextgen/rpy/tests.py
===================================================================
--- branches/rpy_nextgen/rpy/tests.py 2008-10-29 09:38:54 UTC (rev 667)
+++ branches/rpy_nextgen/rpy/tests.py 2008-10-29 20:39:25 UTC (rev 668)
@@ -4,13 +4,20 @@
import rpy2.rinterface.tests
import rpy2.rlike.tests
+import rpy2.tests_rpy_classic
+
def suite():
suite_robjects = rpy2.robjects.tests.suite()
suite_rinterface = rpy2.rinterface.tests.suite()
suite_rlike = rpy2.rlike.tests.suite()
+
+ suite_rpy_classic = rpy2.tests_rpy_classic.suite()
+
alltests = unittest.TestSuite([suite_robjects,
suite_rinterface,
- suite_rlike])
+ suite_rlike,
+ suite_rpy_classic
+ ])
return alltests
if __name__ == "__main__":
Added: branches/rpy_nextgen/rpy/tests_rpy_classic.py
===================================================================
--- branches/rpy_nextgen/rpy/tests_rpy_classic.py
(rev 0)
+++ branches/rpy_nextgen/rpy/tests_rpy_classic.py 2008-10-29 20:39:25 UTC
(rev 668)
@@ -0,0 +1,35 @@
+import unittest
+
+import rpy2.rpy_classic as rpy
+
+
+class RpyClassicTestCase(unittest.TestCase):
+
+ def testAttributeExpansion(self):
+ rpy.set_default_mode(rpy.BASIC_CONVERSION)
+ wtest = rpy.r.wilcox_test
+ self.assertTrue(isinstance(wtest, rpy.Robj))
+
+ def testFunctionCall(self):
+ rpy.set_default_mode(rpy.BASIC_CONVERSION)
+ # positional only
+ three = rpy.r.sum(1,2)
+ three = three[0] # is this what is happening w/ rpy, or the list is
+ # ...automatically dropped ?
+ self.assertEquals(3, three)
+ # positional + keywords
+ onetwothree = rpy.r.seq(1, 3, by=0.5)
+ self.assertEquals([1.0, 1.5, 2.0, 2.5, 3.0], onetwothree)
+
+ def testCallable(self):
+ rpy.set_default_mode(rpy.NO_CONVERSION)
+ #in rpy-1.x, everything is callable
+ self.assertTrue(callable(rpy.r.seq))
+ self.assertTrue(callable(rpy.r.pi))
+
+def suite():
+ suite = unittest.TestLoader().loadTestsFromTestCase(RpyClassicTestCase)
+ return suite
+
+if __name__ == '__main__':
+ unittest.main()
Property changes on: branches/rpy_nextgen/rpy/tests_rpy_classic.py
___________________________________________________________________
Added: svn:eol-style
+ native
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