Revision: 750
http://rpy.svn.sourceforge.net/rpy/?rev=750&view=rev
Author: lgautier
Date: 2009-08-16 05:49:10 +0000 (Sun, 16 Aug 2009)
Log Message:
-----------
Finished the port of the web pages to the new templating system.
RPy pages now have a prefix "rpy_".
Modified Paths:
--------------
trunk/htdocs/build.py
trunk/htdocs/templates/base.html
Added Paths:
-----------
trunk/htdocs/templates/rpy_faq.html
trunk/htdocs/templates/rpy_svn.html
trunk/htdocs/templates/rpy_todo.html
Removed Paths:
-------------
trunk/htdocs/faq.data
trunk/htdocs/svn.data
trunk/htdocs/todo.data
Modified: trunk/htdocs/build.py
===================================================================
--- trunk/htdocs/build.py 2009-08-15 19:20:59 UTC (rev 749)
+++ trunk/htdocs/build.py 2009-08-16 05:49:10 UTC (rev 750)
@@ -7,7 +7,10 @@
'rpy_bugs.html',
'rpy_demo.html',
'rpy_download.html',
- 'rpy2_bugs.html'
+ 'rpy_faq.html',
+ 'rpy_svn.html',
+ 'rpy_todo.html',
+ 'rpy2_bugs.html',
'rpy2_download.html',
'rpy2.html',
)
Deleted: trunk/htdocs/faq.data
===================================================================
--- trunk/htdocs/faq.data 2009-08-15 19:20:59 UTC (rev 749)
+++ trunk/htdocs/faq.data 2009-08-16 05:49:10 UTC (rev 750)
@@ -1,173 +0,0 @@
-<!-- page-title: RPy FAQ -->
-<!-- title: FAQ -->
-
-<p>
-
-<h4>
-Does <code>RPy</code> works in Windows or Mac?
-</h4>
-
- <p>
- Yes, versions since 0.3 support Windows and Mac. RPy is included in the
<a
- href="http://fink.sourceforge.net";>Fink</a> project, which ports
- Unix software to Mac.
- </p>
-
-<h4>
-When I try to import the module in Python with '<code>from rpy import
-*</code>', I get an error:
-<pre>
- ImportError: libR.so: cannot open shared object
- file: No such file or directory
-</pre>
-</h4>
-
- <p>
- You need to ensure that libR.so is available to RPy. First, ensure that
- R has been compiled as a shared library. To compile R as a shared
library,
- perform follow this steps:
-<pre>
- (go to the R source directory)
- make distclean
- ./configure --enable-R-shlib
- make
- make install
-</pre>
-
- During the compilation of RPy, the path to libR.so is included in the RPy
- shared library. This should allow RPy to find libR.so unless it is moved
- to a new location, in which case you will need to do one of the following
- (substitute R_HOME for the directory where R is installed, usually
/usr/local/lib/R):
- <ul>
- <li> make a link to R_HOME/bin/libR.so in /usr/local/lib, or in some
other location that your system knows as a standard place for libraries; then
run 'ldconfig' as root;
- <li> or edit /etc/ld.so.conf to add the line 'R_HOME/bin' and run
'ldconfig' as root;
- <li> or set the environment variable LD_LIBRARY_PATH with
-<pre>
- export LD_LIBRARY_PATH=$LD_LIBRARY_PATH\
- :R_HOME/bin
-</pre>
- in your .bashrc (or equivalent).
- </ul>
- If these suggestions don't work, try to remove the R source directory,
unpack
- the sources again and then execute the previous instructions. It has been
- reported that the removing and unpacking may be necessary.
- </p>
-
- <h4>
- In Windows, when importing RPy, I get:
-<pre>
- ImportError: R.DLL version does not match
-</pre>
- </h4>
-
- <p>
- Make sure that the R bin directory is in your path. This holds
- the R.dll that python needs to load for rpy to work. For R version
- 1.6.1 this path is (by default)
-<pre>
- C:\Program Files\R\rw1061\bin\
-</pre>
- For windows 98 or ME it is easier to use the path
- C:\Progra~1\R\rw1061\bin instead.
-
- <p>
- Under Windows 2000 and later right click on "My Computer" and
- select properties. Now click the Advanced tab and select
- environment variables. Finally edit the path variable under
- system variables and add
-<pre>
- C:\Program Files\R\rw1061\bin\
-</pre>
- to your path. Make sure that all paths are seperated by semi-colons.
-
- <p>
- All others need to edit the Autoexec.bat file and add a line similar to:
-<pre>
- set PATH=%PATH%;C:\Progra~1\R\rw1061\bin
-</pre>
- near the end.
-
-<h4>When R object <tt>'foo'</tt> changes, the expression
- <tt>r.foo</tt> still has the old value. Is this a bug?
-</h4>
-
- It is not a bug (it's a feature :-) ). R objects are cached in a
- Python dictionary after the first time. This is so in order to assign
- them the <a
-
href="rpy/doc/rpy_html/Methods-of-Robj-type.html#Methods%20of%20Robj%20type">local
- conversion mode</a>. If you need to retrieve a changing R object, you
- can use the expression <tt>r('foo')</tt>, which evaluates in the R
- interpreter the expression <tt>'foo'</tt> and returns its result.
-
-<h4>When I load rpy on Unix (Linux, Mac, etc) , I get an error like:
-<pre>
-
- >>> from rpy import *
- Error in gzfile(file, "rb") : invalid `enc" argument
- Error: couldn"t find function "attach"
- Traceback (most recent call last):
- File "<stdin>", line 1, in ?
- File "/usr/local/lib/python2.3/site-packages/rpy.py", line
- 192, in ?
- r = R()
- File "/usr/local/lib/python2.3/site-packages/rpy.py", line
- 174, in __init__
- self.TRUE = self.__getitem__("T")
- File "/usr/local/lib/python2.3/site-packages/rpy.py", line 185, in
- __getitem__
- obj = self.__dict__[name] = self.__dict__.get(name,
- _rpy.get(name))
- rpy.RException: Object "T" not found
- >>>
- </pre>
-</h4>
-
- <p>
- It appears that this is caused by a problem in the build of
- rpy. Rebuilding and installing via:
-<pre>
- python setup.py build -f -g
- python install
-</pre>
- seems to resolve the problem.
- </p>
-
-
-<h4>On windows, I get an error like:
-<pre>
-Warning message:
-unable to load shared library 'C:\Program
-Files\R\rw2011/modules/lapack.dll':
- LoadLibrary failure: The specified module could not be found.
-
-Traceback (most recent call last):
- File "C:/TEMP/Manuel_Metz_2004_11_22.py", line 9, in -toplevel-
- para = rpy.r.summary(fit) #Here I get an error
-RException: Error in La.chol2inv(x, size) : lapack routines cannot be loaded
-</pre>
-</h4>
-
- <p>
- This error occurs if you don't have the R 'bin' directory in
- your path.
-
- Under Windows 2000 right click on "My Computer" and select
- properties. Now click the Advanced tab and select environment
- variables. Finally edit the path variable under system
- variables and add
-<pre>
- C:\Program Files\R\rw2011\bin\
-</pre>
- to your path. Make sure that all paths are seperated by semi-colons.
-
- <p>
- All others need to edit the Autoexec.bat file and add a line similar to:
-<pre>
- set PATH=%PATH%;C:\Progra~1\R\rw2011\bin
-</pre>
- near the end.
-
- Note that you should replace the '2011', which is appropriate
- for R version 2.1.1, with the appropriate number for the R
- version you have installed.
- </p>
Deleted: trunk/htdocs/svn.data
===================================================================
--- trunk/htdocs/svn.data 2009-08-15 19:20:59 UTC (rev 749)
+++ trunk/htdocs/svn.data 2009-08-16 05:49:10 UTC (rev 750)
@@ -1,30 +0,0 @@
-<!-- page-title: RPy Subversion Repository -->
-<!-- title: Subversion Repository -->
-
- <p>
- Browse the Subversion repository
- </p>
-
- <center>
- <font size=+2>
- <a href="http://rpy.svn.sourceforge.net/viewvc/rpy/";>
- Subversion Viewer (ViewVC)
- </a>
- </font>
- </center>
-
- <p>
- Anonymous Subversion access:
- </p>
-
- <center>
- <font size=+2>
- <a href="http://sourceforge.net/svn/?group_id=48422";>
- RPy Subversion Access Info Page
- </a>
- </font>
- </center>
-
-
-
-
Modified: trunk/htdocs/templates/base.html
===================================================================
--- trunk/htdocs/templates/base.html 2009-08-15 19:20:59 UTC (rev 749)
+++ trunk/htdocs/templates/base.html 2009-08-16 05:49:10 UTC (rev 750)
@@ -48,12 +48,12 @@
<ul class="menu">
<li><a href="rpy.html">About</a></li>
<li><a href="rpy_bugs.html">Bugs</a></li>
- <li><a href="svn.html">Code repository</a></li>
+ <li><a href="rpy_svn.html">Code repository</a></li>
<li><a href="rpy_download.html">Download</a></li>
- <li><a href="documentation.html">Documentation</a></li>
+ <li><a href="rpy_documentation.html">Documentation</a></li>
<li><a href="rpy_demo.html">Demo</a></li>
- <li><a href="faq.html">FAQ</a></li>
- <li><a href="todo.html">To do</a></li>
+ <li><a href="rpy_faq.html">FAQ</a></li>
+ <li><a href="rpy_todo.html">To do</a></li>
<li><a href="http://rpy.wiki.sourceforge.net/";>Wiki</a></li>
</ul>
<b>rpy2</b>
Added: trunk/htdocs/templates/rpy_faq.html
===================================================================
--- trunk/htdocs/templates/rpy_faq.html (rev 0)
+++ trunk/htdocs/templates/rpy_faq.html 2009-08-16 05:49:10 UTC (rev 750)
@@ -0,0 +1,179 @@
+{% extends "base.html" %}
+
+{% block main %}
+
+
+<p>
+
+<h4>
+Does <code>RPy</code> works in Windows or Mac?
+</h4>
+
+ <p>
+ Yes, versions since 0.3 support Windows and Mac. RPy is included in the
<a
+ href="http://fink.sourceforge.net";>Fink</a> project, which ports
+ Unix software to Mac.
+ </p>
+
+<h4>
+When I try to import the module in Python with '<code>from rpy import
+*</code>', I get an error:
+<pre>
+ ImportError: libR.so: cannot open shared object
+ file: No such file or directory
+</pre>
+</h4>
+
+ <p>
+ You need to ensure that libR.so is available to RPy. First, ensure that
+ R has been compiled as a shared library. To compile R as a shared
library,
+ perform follow this steps:
+<pre>
+ (go to the R source directory)
+ make distclean
+ ./configure --enable-R-shlib
+ make
+ make install
+</pre>
+
+ During the compilation of RPy, the path to libR.so is included in the RPy
+ shared library. This should allow RPy to find libR.so unless it is moved
+ to a new location, in which case you will need to do one of the following
+ (substitute R_HOME for the directory where R is installed, usually
/usr/local/lib/R):
+ <ul>
+ <li> make a link to R_HOME/bin/libR.so in /usr/local/lib, or in some
other location that your system knows as a standard place for libraries; then
run 'ldconfig' as root;
+ <li> or edit /etc/ld.so.conf to add the line 'R_HOME/bin' and run
'ldconfig' as root;
+ <li> or set the environment variable LD_LIBRARY_PATH with
+<pre>
+ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH\
+ :R_HOME/bin
+</pre>
+ in your .bashrc (or equivalent).
+ </ul>
+ If these suggestions don't work, try to remove the R source directory,
unpack
+ the sources again and then execute the previous instructions. It has been
+ reported that the removing and unpacking may be necessary.
+ </p>
+
+ <h4>
+ In Windows, when importing RPy, I get:
+<pre>
+ ImportError: R.DLL version does not match
+</pre>
+ </h4>
+
+ <p>
+ Make sure that the R bin directory is in your path. This holds
+ the R.dll that python needs to load for rpy to work. For R version
+ 1.6.1 this path is (by default)
+<pre>
+ C:\Program Files\R\rw1061\bin\
+</pre>
+ For windows 98 or ME it is easier to use the path
+ C:\Progra~1\R\rw1061\bin instead.
+
+ <p>
+ Under Windows 2000 and later right click on "My Computer" and
+ select properties. Now click the Advanced tab and select
+ environment variables. Finally edit the path variable under
+ system variables and add
+<pre>
+ C:\Program Files\R\rw1061\bin\
+</pre>
+ to your path. Make sure that all paths are seperated by semi-colons.
+
+ <p>
+ All others need to edit the Autoexec.bat file and add a line similar to:
+<pre>
+ set PATH=%PATH%;C:\Progra~1\R\rw1061\bin
+</pre>
+ near the end.
+
+<h4>When R object <tt>'foo'</tt> changes, the expression
+ <tt>r.foo</tt> still has the old value. Is this a bug?
+</h4>
+
+ It is not a bug (it's a feature :-) ). R objects are cached in a
+ Python dictionary after the first time. This is so in order to assign
+ them the <a
+
href="rpy/doc/rpy_html/Methods-of-Robj-type.html#Methods%20of%20Robj%20type">local
+ conversion mode</a>. If you need to retrieve a changing R object, you
+ can use the expression <tt>r('foo')</tt>, which evaluates in the R
+ interpreter the expression <tt>'foo'</tt> and returns its result.
+
+<h4>When I load rpy on Unix (Linux, Mac, etc) , I get an error like:
+<pre>
+
+ >>> from rpy import *
+ Error in gzfile(file, "rb") : invalid `enc" argument
+ Error: couldn"t find function "attach"
+ Traceback (most recent call last):
+ File "<stdin>", line 1, in ?
+ File "/usr/local/lib/python2.3/site-packages/rpy.py", line
+ 192, in ?
+ r = R()
+ File "/usr/local/lib/python2.3/site-packages/rpy.py", line
+ 174, in __init__
+ self.TRUE = self.__getitem__("T")
+ File "/usr/local/lib/python2.3/site-packages/rpy.py", line 185, in
+ __getitem__
+ obj = self.__dict__[name] = self.__dict__.get(name,
+ _rpy.get(name))
+ rpy.RException: Object "T" not found
+ >>>
+ </pre>
+</h4>
+
+ <p>
+ It appears that this is caused by a problem in the build of
+ rpy. Rebuilding and installing via:
+<pre>
+ python setup.py build -f -g
+ python install
+</pre>
+ seems to resolve the problem.
+ </p>
+
+
+<h4>On windows, I get an error like:
+<pre>
+Warning message:
+unable to load shared library 'C:\Program
+Files\R\rw2011/modules/lapack.dll':
+ LoadLibrary failure: The specified module could not be found.
+
+Traceback (most recent call last):
+ File "C:/TEMP/Manuel_Metz_2004_11_22.py", line 9, in -toplevel-
+ para = rpy.r.summary(fit) #Here I get an error
+RException: Error in La.chol2inv(x, size) : lapack routines cannot be loaded
+</pre>
+</h4>
+
+ <p>
+ This error occurs if you don't have the R 'bin' directory in
+ your path.
+
+ Under Windows 2000 right click on "My Computer" and select
+ properties. Now click the Advanced tab and select environment
+ variables. Finally edit the path variable under system
+ variables and add
+<pre>
+ C:\Program Files\R\rw2011\bin\
+</pre>
+ to your path. Make sure that all paths are seperated by semi-colons.
+
+ <p>
+ All others need to edit the Autoexec.bat file and add a line similar to:
+<pre>
+ set PATH=%PATH%;C:\Progra~1\R\rw2011\bin
+</pre>
+ near the end.
+
+ Note that you should replace the '2011', which is appropriate
+ for R version 2.1.1, with the appropriate number for the R
+ version you have installed.
+ </p>
+
+
+{% endblock %}
+
Added: trunk/htdocs/templates/rpy_svn.html
===================================================================
--- trunk/htdocs/templates/rpy_svn.html (rev 0)
+++ trunk/htdocs/templates/rpy_svn.html 2009-08-16 05:49:10 UTC (rev 750)
@@ -0,0 +1,33 @@
+{% extends "base.html" %}
+
+{% block main %}
+
+
+ <p>
+ Browse the Subversion repository
+ </p>
+
+ <center>
+ <font size=+2>
+ <a href="http://rpy.svn.sourceforge.net/viewvc/rpy/";>
+ Subversion Viewer (ViewVC)
+ </a>
+ </font>
+ </center>
+
+ <p>
+ Anonymous Subversion access:
+ </p>
+
+ <center>
+ <font size=+2>
+ <a href="http://sourceforge.net/svn/?group_id=48422";>
+ RPy Subversion Access Info Page
+ </a>
+ </font>
+ </center>
+
+
+
+{% endblock %}
+
Added: trunk/htdocs/templates/rpy_todo.html
===================================================================
--- trunk/htdocs/templates/rpy_todo.html (rev 0)
+++ trunk/htdocs/templates/rpy_todo.html 2009-08-16 05:49:10 UTC (rev
750)
@@ -0,0 +1,12 @@
+{% extends "base.html" %}
+
+{% block main %}
+
+<p>
+<ul>
+<li> Possibility to pass Python functions as arguments to R functions.
+<li> More builtin classes for conversion of R classes.
+</ul>
+</P>
+
+{% endblock %}
Deleted: trunk/htdocs/todo.data
===================================================================
--- trunk/htdocs/todo.data 2009-08-15 19:20:59 UTC (rev 749)
+++ trunk/htdocs/todo.data 2009-08-16 05:49:10 UTC (rev 750)
@@ -1,9 +0,0 @@
-<!-- page-title: To do -->
-<!-- title: To do -->
-
-<p>
-<ul>
-<li> Possibility to pass Python functions as arguments to R functions.
-<li> More builtin classes for conversion of R classes.
-</ul>
-</p>
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