Hi Thomas,
Please excuse my limited knowledge. I do not quite know how to replace it.
Could you please write the full syntax for me? By the way, is this a
compatibility problem between Python 3.2.2 and rpy2?
Many thanks,
Y.Z.
On Mon, Mar 26, 2012 at 5:02 AM, Thomas Kluyver <tak...@gmail.com> wrote:
> Hi Yuanda,
>
> You should edit setup.py to use subprocess.check_output() instead of
> os.popen3(). Note that it's not a direct replacement - popen3 returns
> a file-like object with a readline method; check_output() returns a
> string (use s.splitlines() to make a list of lines).
>
> For reference, you can see the current code here:
> https://bitbucket.org/lgautier/rpy2/src/f075a4291e9c/setup.py#cl-185
>
> Thomas
>
> On 25 March 2012 21:54, Yuanda Zhu <jianjian.i...@gmail.com> wrote:
> > Hi Thomas,
> >
> > Here is the traceback:
> >
> > Traceback (most recent call last):
> > File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 462,
> in
> > <module>
> > [os.path.join('doc', 'source', 'rpy2_logo.png')])],
> > File "F:\Python32\lib\distutils\core.py", line 148, in setup
> > dist.run_commands()
> > File "F:\Python32\lib\distutils\dist.py", line 917, in run_commands
> > self.run_command(cmd)
> > File "F:\Python32\lib\distutils\dist.py", line 936, in run_command
> > cmd_obj.run()
> > File "F:\Python32\lib\distutils\command\install.py", line 569, in run
> > self.run_command('build')
> > File "F:\Python32\lib\distutils\cmd.py", line 313, in run_command
> > self.distribution.run_command(command)
> > File "F:\Python32\lib\distutils\dist.py", line 936, in run_command
> > cmd_obj.run()
> > File "F:\Python32\lib\distutils\command\build.py", line 126, in run
> > self.run_command(cmd_name)
> > File "F:\Python32\lib\distutils\cmd.py", line 313, in run_command
> > self.distribution.run_command(command)
> > File "F:\Python32\lib\distutils\dist.py", line 935, in run_command
> > cmd_obj.ensure_finalized()
> > File "F:\Python32\lib\distutils\cmd.py", line 107, in ensure_finalized
> > self.finalize_options()
> > File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 144,
> in
> > finalize_options
> > rversion = get_rversion(r_home)
> > File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 180,
> in
> > get_rversion
> > rp = os.popen3('"'+r_exec+'" --version')[2]
> > AttributeError: 'module' object has no attribute 'popen3'
> >
> > Please help me, thank you very much
> >
> > Y.Z.
> >
> > On Mon, Mar 26, 2012 at 4:24 AM, Yuanda Zhu <jianjian.i...@gmail.com>
> wrote:
> >>
> >> Hi Niek,
> >>
> >> Here is the Traceback
> >>
> >>
> >> Traceback (most recent call last):
> >> File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 462,
> in
> >> <module>
> >> [os.path.join('doc', 'source', 'rpy2_logo.png')])],
> >> File "F:\Python32\lib\distutils\core.py", line 148, in setup
> >> dist.run_commands()
> >> File "F:\Python32\lib\distutils\dist.py", line 917, in run_commands
> >> self.run_command(cmd)
> >> File "F:\Python32\lib\distutils\dist.py", line 936, in run_command
> >> cmd_obj.run()
> >> File "F:\Python32\lib\distutils\command\install.py", line 569, in run
> >> self.run_command('build')
> >> File "F:\Python32\lib\distutils\cmd.py", line 313, in run_command
> >> self.distribution.run_command(command)
> >> File "F:\Python32\lib\distutils\dist.py", line 936, in run_command
> >> cmd_obj.run()
> >> File "F:\Python32\lib\distutils\command\build.py", line 126, in run
> >> self.run_command(cmd_name)
> >> File "F:\Python32\lib\distutils\cmd.py", line 313, in run_command
> >> self.distribution.run_command(command)
> >> File "F:\Python32\lib\distutils\dist.py", line 935, in run_command
> >> cmd_obj.ensure_finalized()
> >> File "F:\Python32\lib\distutils\cmd.py", line 107, in ensure_finalized
> >> self.finalize_options()
> >> File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 144,
> in
> >> finalize_options
> >> rversion = get_rversion(r_home)
> >> File "G:\Backup\Setup\Python\Packages\rpy2-2.2.5\setup.py", line 180,
> in
> >> get_rversion
> >> rp = os.popen3('"'+r_exec+'" --version')[2]
> >>
> >> AttributeError: 'module' object has no attribute 'popen3'
> >>
> >>
> >> Please help me fix this, many thanks.
> >>
> >> Y.Z.
> >>
> >>
> >> On Mon, Mar 26, 2012 at 3:59 AM, Thomas Kluyver <tak...@gmail.com>
> wrote:
> >>>
> >>> On 25 March 2012 20:17, Yuanda Zhu <jianjian.i...@gmail.com> wrote:
> >>> > AttributeError:'module' object has no attribute 'popen3'
> >>>
> >>> Can you post the traceback that goes with this? It's most likely a bug
> >>> somewhere, as popen3 calls should be replaced using the subprocess
> >>> module (see
> >>>
> http://docs.python.org/library/subprocess.html#replacing-os-popen-os-popen2-os-popen3
> ).
> >>>
> >>> Thanks,
> >>> Thomas
> >>>
> >>>
> >>>
> ------------------------------------------------------------------------------
> >>> This SF email is sponsosred by:
> >>> Try Windows Azure free for 90 days Click Here
> >>> http://p.sf.net/sfu/sfd2d-msazure
> >>> _______________________________________________
> >>> rpy-list mailing list
> >>> rpy-list@lists.sourceforge.net
> >>> https://lists.sourceforge.net/lists/listinfo/rpy-list
> >>
> >>
> >
> >
> >
> ------------------------------------------------------------------------------
> > This SF email is sponsosred by:
> > Try Windows Azure free for 90 days Click Here
> > http://p.sf.net/sfu/sfd2d-msazure
> > _______________________________________________
> > rpy-list mailing list
> > rpy-list@lists.sourceforge.net
> > https://lists.sourceforge.net/lists/listinfo/rpy-list
> >
>
>
> ------------------------------------------------------------------------------
> This SF email is sponsosred by:
> Try Windows Azure free for 90 days Click Here
> http://p.sf.net/sfu/sfd2d-msazure
> _______________________________________________
> rpy-list mailing list
> rpy-list@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/rpy-list
>
------------------------------------------------------------------------------
This SF email is sponsosred by:
Try Windows Azure free for 90 days Click Here
http://p.sf.net/sfu/sfd2d-msazure
_______________________________________________
rpy-list mailing list
rpy-list@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rpy-list
