Hi Laurent,
Thanks for the info. I will investigate it further and report.
My apologies for dropping the list - I didn't realize I did that. Back online
now.
Best,
Yair
On Jun 28, 2012, at 5:10 PM, Laurent Gautier wrote:
> On 2012-06-28 21:20, Yair Benita wrote:
>> Hi Laurent,
>> Thanks for the response. Your constant support of this project is admirable.
>>
>> The Rconfig.h and Rversion.h are both in
>> /Library/Frameworks/R.framework/Versions/2.1.4/Resources/include
>> However, there are sub-directories for i386 and x86_64 in include that each
>> have both files.
>> In the include directory, it would point to i386 or x86_64 depending on the
>> platform.
>>
>> I found another interesting issue. The default python in /usr/bin/python is
>> version 2.6.1 and appear to be able to compile Rpy2.
>
> Yes. The 2.2.x series for rpy2 should work with Python 2.6. Rpy2-2.3.x
> whenever released might only work with Python 2.7, and beyond that it might
> Python 3-only.
>
>> This python is also 64 bit.
>> When I use python 2.7 which I installed using Fink. I get the error below.
>> Any idea why that happens?
>
> Many things can go wrong with Fink (or Macports... those are the two I used a
> bit). May be they do funny stuff to the framework definitions ? I vaguely
> remember people having such problem that went away when they compiled their
> own Python (I did compile my own when using OS X).
>>
>> Thanks,
>> Yair
>>
>> On Thu, Jun 28, 2012 at 8:53 AM, Laurent Gautier <lgaut...@gmail.com> wrote:
>>
>>
>> On 2012-06-28 07:21, Yair Benita wrote:
>> Hi All,
>> I am trying to install rpy2 (2.2.6) on mac os x 10.6.8 with python 2.7 and R
>> 2.14.1.
>> I think all my env variables are correct but I still get the underlying
>> error. I think I previously solved it by forcing it to compile with arch
>> x86_64 - but I can't remember what I did.
>>
>> One good reason to share fixes to issues with the community (so it acts as
>> collective memory ;-) ).
>>
>> At the moment I don't have OS X-10.6.8 nearby. Can you locate where are
>> Rconfig.h or Rversion.h ?
>>
>>
>> L.
>>
>>
>> Can anyone help?
>>
>> Thanks,
>> Yair
>>
>> ~$ easy_install rpy2
>> Searching for rpy2
>> Reading http://pypi.python.org/simple/rpy2/
>> Reading http://rpy.sourceforge.net
>> Best match: rpy2 2.2.6
>> Downloading
>> http://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz#md5=32d73a3e4acb915ce15d958c9092dcb8
>> Processing rpy2-2.2.6.tar.gz
>> Writing
>> /var/folders/HU/HUM+PVEdFU8FgIU8u5qB+k+++TI/-Tmp-/easy_install-UIkMqK/rpy2-2.2.6/setup.cfg
>> Running rpy2-2.2.6/setup.py -q bdist_egg --dist-dir
>> /var/folders/HU/HUM+PVEdFU8FgIU8u5qB+k+++TI/-Tmp-/easy_install-UIkMqK/rpy2-2.2.6/egg-dist-tmp-G4GNIC
>> Configuration for R as a library:
>> include_dirs: ('/Library/Frameworks/R.framework/Resources/include',
>> '/Library/Frameworks/R.framework/Resources/include/x86_64')
>> libraries: ('Rblas', 'Rlapack')
>> library_dirs: ('/Library/Frameworks/R.framework/Resources/lib/x86_64',)
>> extra_link_args: ('-framework R', '-F/Library/Frameworks/R.framework/..')
>> # OSX-specific (included in extra_link_args)
>> framework_dirs: ('-F/Library/Frameworks/R.framework/..',)
>> frameworks: ('-framework R',)
>> warning: no previously-included files matching '*patch*' found anywhere in
>> distribution
>> warning: no previously-included files matching '*diff*' found anywhere in
>> distribution
>> warning: no previously-included files matching '.hg' found anywhere in
>> distribution
>> no previously-included directories found matching 'dist'
>> In file included from ./rpy/rinterface/_rinterface.c:63:
>> /Library/Frameworks/R.framework/Resources/include/Rinternals.h:657: warning:
>> function declaration isn’t a prototype
>> In file included from ./rpy/rinterface/_rinterface.c:79:
>> /Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26:
>> warning: function declaration isn’t a prototype
>> In file included from ./rpy/rinterface/_rinterface.c:132:
>> ./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’:
>> ./rpy/rinterface/sequence.c:542: warning: unused variable ‘sexp_item’
>> ./rpy/rinterface/sequence.c:542: warning: unused variable ‘tmp’
>> ./rpy/rinterface/sequence.c:541: warning: unused variable ‘vs’
>> ./rpy/rinterface/sequence.c:478: warning: unused variable ‘self_typeof’
>> ./rpy/rinterface/_rinterface.c: At top level:
>> ./rpy/rinterface/sequence.c:2173: warning: ‘ComplexVectorSexp_AsSexp’
>> defined but not used
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowFiles’:
>> ./rpy/rinterface/_rinterface.c:748: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_FlushConsole’:
>> ./rpy/rinterface/_rinterface.c:602: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ReadConsole’:
>> ./rpy/rinterface/_rinterface.c:470: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_WriteConsole’:
>> ./rpy/rinterface/_rinterface.c:328: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowMessage’:
>> ./rpy/rinterface/_rinterface.c:402: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_CleanUp’:
>> ./rpy/rinterface/_rinterface.c:896: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ChooseFile’:
>> ./rpy/rinterface/_rinterface.c:646: warning: ‘gstate’ may be used
>> uninitialized in this function
>> In file included from
>> /Library/Frameworks/R.framework/Resources/include/R.h:34,
>> from ./rpy/rinterface/_rinterface.c:61:
>> /Library/Frameworks/R.framework/Resources/include/Rconfig.h:5:25: error:
>> ppc/Rconfig.h: No such file or directory
>> In file included from ./rpy/rinterface/_rinterface.c:62:
>> /Library/Frameworks/R.framework/Resources/include/Rversion.h:5:26: error:
>> ppc/Rversion.h: No such file or directory
>> In file included from ./rpy/rinterface/_rinterface.c:63:
>> /Library/Frameworks/R.framework/Resources/include/Rinternals.h:657: warning:
>> function declaration isn’t a prototype
>> In file included from ./rpy/rinterface/_rinterface.c:79:
>> /Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26:
>> warning: function declaration isn’t a prototype
>> In file included from ./rpy/rinterface/_rinterface.c:110:
>> ./rpy/rinterface/r_utils.h:13: error: ‘R_MAJOR’ undeclared here (not in a
>> function)
>> ./rpy/rinterface/r_utils.h:13: error: ‘R_MINOR’ undeclared here (not in a
>> function)
>> ./rpy/rinterface/r_utils.h:13: error: ‘R_STATUS’ undeclared here (not in a
>> function)
>> ./rpy/rinterface/r_utils.h:14: error: ‘R_SVN_REVISION’ undeclared here (not
>> in a function)
>> In file included from ./rpy/rinterface/_rinterface.c:132:
>> ./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’:
>> ./rpy/rinterface/sequence.c:542: warning: unused variable ‘sexp_item’
>> ./rpy/rinterface/sequence.c:542: warning: unused variable ‘tmp’
>> ./rpy/rinterface/sequence.c:541: warning: unused variable ‘vs’
>> ./rpy/rinterface/sequence.c:478: warning: unused variable ‘self_typeof’
>> In file included from ./rpy/rinterface/_rinterface.c:63:
>> /Library/Frameworks/R.framework/Resources/include/Rinternals.h:657: warning:
>> function declaration isn’t a prototype
>> In file included from ./rpy/rinterface/_rinterface.c:79:
>> /Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26:
>> warning: function declaration isn’t a prototype
>> In file included from ./rpy/rinterface/_rinterface.c:132:
>> ./rpy/rinterface/sequence.c: In function ‘VectorSexp_ass_slice’:
>> ./rpy/rinterface/sequence.c:542: warning: unused variable ‘sexp_item’
>> ./rpy/rinterface/sequence.c:542: warning: unused variable ‘tmp’
>> ./rpy/rinterface/sequence.c:541: warning: unused variable ‘vs’
>> ./rpy/rinterface/sequence.c:478: warning: unused variable ‘self_typeof’
>> ./rpy/rinterface/_rinterface.c: At top level:
>> ./rpy/rinterface/sequence.c:2173: warning: ‘ComplexVectorSexp_AsSexp’
>> defined but not used
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowFiles’:
>> ./rpy/rinterface/_rinterface.c:748: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_FlushConsole’:
>> ./rpy/rinterface/_rinterface.c:602: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ReadConsole’:
>> ./rpy/rinterface/_rinterface.c:470: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_WriteConsole’:
>> ./rpy/rinterface/_rinterface.c:328: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ShowMessage’:
>> ./rpy/rinterface/_rinterface.c:402: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_CleanUp’:
>> ./rpy/rinterface/_rinterface.c:896: warning: ‘gstate’ may be used
>> uninitialized in this function
>> ./rpy/rinterface/_rinterface.c: In function ‘EmbeddedR_ChooseFile’:
>> ./rpy/rinterface/_rinterface.c:646: warning: ‘gstate’ may be used
>> uninitialized in this function
>> lipo: can't open input file:
>> /var/folders/HU/HUM+PVEdFU8FgIU8u5qB+k+++TI/-Tmp-//cclnDZS2.out (No such
>> file or directory)
>> error: Setup script exited with error: command 'gcc-4.2' failed with exit
>> status 1
>>
>>
>> ------------------------------------------------------------------------------
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>>
>
>
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