On 30 May 2013 at 19:27, Laurent Gautier wrote: | Not a direct answer to your question, but as the long list of deprecation | warnings occurring during the installation suggest it, investing the | (presumably little) effort required to help Galaxy move to rpy2 might be a | better idea. | | The direct answer is: an include file from R has moved, or disappeared. Dirk | Eddelbuettel has been maintaining the rpy package on debian. Check if there is | .deb for rpy/R-3.0. If yes, the SVN source for rpy should build. If not, you | are probably on your own.
Yes, something had come up as R Core tends to tighten the APU over time. The changelog below was from my build against R 3.0.0 a few weeks ago (and I took this as reminder to update things for R 3.0.1 just now): rpy (1.0.3-25) unstable; urgency=low * src/RPy.h: Comment-out (Rf_)PrintWarnings() which is no longer available under R 3.0.0; change committed to upstream SVN too * src/rpymodule.c: Idem (Closes: #705847) -- Dirk Eddelbuettel <e...@debian.org> Mon, 22 Apr 2013 19:22:49 -0500 The last few commits to the rpy SVN were in all mine as I kept the Debian package going -- mostly to continuity. I generally second Laurent's recommendation: you probably really want to use RPy2. Hth, Dirk -- Dirk Eddelbuettel | e...@debian.org | http://dirk.eddelbuettel.com ------------------------------------------------------------------------------ How ServiceNow helps IT people transform IT departments: 1. A cloud service to automate IT design, transition and operations 2. Dashboards that offer high-level views of enterprise services 3. A single system of record for all IT processes http://p.sf.net/sfu/servicenow-d2d-j _______________________________________________ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list