Trying to install rpy2 on redhat 6.7. I have R version 3.1.0: $ R --version
R version 3.1.0 (2014-04-10) -- "Spring Dance" Here is what I get from pip2.7 install rpy2: $ pip install rpy2 Collecting rpy2 Downloading rpy2-2.8.6.tar.gz (191kB) 100% |████████████████████████████████| 194kB 1.3MB/s Requirement already satisfied (use --upgrade to upgrade): six in /usr/local/lib/python2.7/site-packages (from rpy2) Collecting singledispatch (from rpy2) Downloading singledispatch-3.4.0.3-py2.py3-none-any.whl Installing collected packages: singledispatch, rpy2 Running setup.py install for rpy2 ... error Complete output from command /usr/local/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-cM5dhd/rpy2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-zyalf5-record/install-record.txt --single-version-externally-managed --compile: R version 3.1.0 (2014-04-10) -- "Spring Dance" /tmp/pip-build-cM5dhd/rpy2/setup.py:236: UserWarning: R did not seem to have the minimum required version number warnings.warn("R did not seem to have the minimum required version number") /usr/local/lib64/R/bin/R CMD config --ldflags R was not built as a library /usr/local/lib64/R/bin/R CMD config --cppflags R was not built as a library /tmp/pip-build-cM5dhd/rpy2/setup.py:251: UserWarning: No include specified warnings.warn('No include specified') /tmp/pip-build-cM5dhd/rpy2/setup.py:262: UserWarning: No libraries as -l arguments to the compiler. warnings.warn('No libraries as -l arguments to the compiler.') Compilation parameters for rpy2's C components: include_dirs = [] library_dirs = [] libraries = [] extra_link_args = [] running install running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/rpy2 copying ./rpy/__init__.py -> build/lib.linux-x86_64-2.7/rpy2 copying ./rpy/tests_rpy_classic.py -> build/lib.linux-x86_64-2.7/rpy copying ./rpy/rpy_classic.py -> build/lib.linux-x86_64-2.7/rpy2 copying ./rpy/tests.py -> build/lib.linux-x86_64-2.7/rpy2 creating build/lib.linux-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/indexing.py -> build/lib.linux-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/container.py -> build/lib.linux-x86_64-2.7/rpy2/rlike copying ./rpy/rlike/functional.py -> build/lib.linux-x86_64-2.7/rpy2/rlike creating build/lib.linux-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/test_indexing.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/test_functional.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests copying ./rpy/rlike/tests/test_container.py -> build/lib.linux-x86_64-2.7/rpy2/rlike/tests creating build/lib.linux-x86_64-2.7/rpy2/rinterface copying ./rpy/rinterface/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface creating build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpSymbol.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpVector.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_Sexp.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpExtPtr.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpEnvironment.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_EmbeddedR.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpClosure.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_Device.py -> build/lib.linux-x86_64-2.7/rpy2/rinterface/tests creating build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/functions.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/vectors.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/environments.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/language.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/packages_utils.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/packages.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/pandas2ri.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/numpy2ri.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/conversion.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/methods.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/help.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/robject.py -> build/lib.linux-x86_64-2.7/rpy2/robjects copying ./rpy/robjects/constants.py -> build/lib.linux-x86_64-2.7/rpy2/robjects creating build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testMethods.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testPandasConversions.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testRObject.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testFunction.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testNumpyConversions.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testArray.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testDataFrame.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testEnvironment.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testVector.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testPackages.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testHelp.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testLanguage.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testRobjects.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests copying ./rpy/robjects/tests/testFormula.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/tests creating build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/tidyr.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/grid.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/grdevices.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/dplyr.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib copying ./rpy/robjects/lib/ggplot2.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib creating build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_ggplot2.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_grdevices.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_dplyr.py -> build/lib.linux-x86_64-2.7/rpy2/robjects/lib/tests creating build/lib.linux-x86_64-2.7/rpy2/interactive copying ./rpy/interactive/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/interactive copying ./rpy/interactive/packages.py -> build/lib.linux-x86_64-2.7/rpy2/interactive copying ./rpy/interactive/process_revents.py -> build/lib.linux-x86_64-2.7/rpy2/interactive creating build/lib.linux-x86_64-2.7/rpy2/interactive/tests copying ./rpy/interactive/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/interactive/tests creating build/lib.linux-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/html.py -> build/lib.linux-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/ggplot.py -> build/lib.linux-x86_64-2.7/rpy2/ipython copying ./rpy/ipython/rmagic.py -> build/lib.linux-x86_64-2.7/rpy2/ipython creating build/lib.linux-x86_64-2.7/rpy2/ipython/tests copying ./rpy/ipython/tests/__init__.py -> build/lib.linux-x86_64-2.7/rpy2/ipython/tests copying ./rpy/ipython/tests/test_rmagic.py -> build/lib.linux-x86_64-2.7/rpy2/ipython/tests running build_clib building 'r_utils' library creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/rp creating build/temp.linux-x86_64-2.7/rpy/rinterface gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I./rpy/rinterface -c ./rpy/rinterface/r_utils.c -o build/temp.linux-x86_64-2.7/./rpy/rinterface/r_utils.o ./rpy/rinterface/r_utils.c:23:22: error: Rdefines.h: No such file or directory ./rpy/rinterface/r_utils.c:24:31: error: R_ext/Rallocators.h: No such file or directory In file included from ./rpy/rinterface/r_utils.c:25: ./rpy/rinterface/r_utils.h:5:22: error: Rversion.h: No such file or directory In file included from ./rpy/rinterface/r_utils.c:25: ./rpy/rinterface/r_utils.h:7: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_serialize’ ./rpy/rinterface/r_utils.h:8: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_unserialize’ ./rpy/rinterface/r_utils.h:9: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_remove’ ./rpy/rinterface/r_utils.h:11: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_list_attr’ ./rpy/rinterface/r_utils.h:13: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_lang2str’ ./rpy/rinterface/r_utils.h:15: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘externallymanaged_vector’ ./rpy/rinterface/r_utils.h:17: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_newenv’ ./rpy/rinterface/r_utils.h:27: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_findfun’ ./rpy/rinterface/r_utils.c:53: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_findfun’ ./rpy/rinterface/r_utils.c:80: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_serialize’ ./rpy/rinterface/r_utils.c:104: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_unserialize’ ./rpy/rinterface/r_utils.c:124: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_list_attr’ ./rpy/rinterface/r_utils.c:147: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_remove’ ./rpy/rinterface/r_utils.c:163: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_newenv’ ./rpy/rinterface/r_utils.c:180: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘rpy2_lang2str’ ./rpy/rinterface/r_utils.c:213: error: expected ‘)’ before ‘*’ token ./rpy/rinterface/r_utils.c:219: error: expected ‘)’ before ‘*’ token ./rpy/rinterface/r_utils.c:225: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘externallymanaged_vector’ error: command 'gcc' failed with exit status 1 ---------------------------------------- Command "/usr/local/bin/python2.7 -u -c "import setuptools, tokenize;__file__='/tmp/pip-build-cM5dhd/rpy2/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-zyalf5-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-build-cM5dhd/rpy2/ ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ rpy-list mailing list rpy-list@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/rpy-list