Seems I fixed this by using instructions here:
https://groups.google.com/forum/#!topic/s3ql/1kRyzy6CM2k

On Monday, March 9, 2015 at 10:21:04 PM UTC-4, Joseff Betancourt wrote:
>
> I am unable to mount or fsck the 2.12 container after an unsuccessful 
> upgrade to 2.13.
>
> Is there a way to tell 2.12 fsck to force check it as nothing is actually 
> mounted but it thingk it is.
>
> "./fsck.s3ql "rackspace://region:contatiner"                               
>               
>
> Can not check mounted file system. "
>
>
> We need to fix this asap and any help is appreciated.
>

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