Thank Travis. I am compiling from source of course. The problem might be
that bash install function I wrote uses "make all" rarher than just "make",
which is what I used to do by hand....accorrding to the makefile these
should be equivalent but it is the only difference I can see. Will test
when I have access to a proper internet connection again.
A.
On Friday, 28 June 2013 13:55:38 UTC+2, Travis Scrimshaw wrote:
>
> Hey Andrew,
> Are you compiling it from source code or using the prebuilt? Because I
> believe building the doc is built during the compilation. As for the
> prebuilts, since sage now copies over the doc (previously it just rebuilt
> it) and it may not be included in; so look in your sage/doc/output... to
> see if there is doc already built. If not, then I guess you'll have to
> build the doc first (or at least put a temp folder) and we'll need to make
> a ticket on this (likely a blocker).
>
> Best,
> Travis
>
>
> On Friday, June 28, 2013 11:03:26 AM UTC+2, Andrew Mathas wrote:
>>
>> Hi All,
>>
>> Whenever I try installing the combinat queue on top of a new verion tehse
>> days I run into an error like this:
>>
>> MacAndrew-528-(sage-5.10)-combinat: sage -combinat install
>> Creating sage-combinat branch:
>> /usr/local/src/sage/sage-5.10/sage -b main
>>
>> ----------------------------------------------------------
>> sage: Building and installing modified Sage library files.
>>
>>
>> Installing c_lib
>> /usr/local/src/sage/sage-5.10/devel/sage/c_lib
>> g++ -o libcsage.dylib -single_module -flat_namespace -undefined
>> dynamic_lookup -dynamiclib src/convert.os src/interrupt.os src/memory.os
>> src/mpn_pylong.os src/mpz_pylong.os src/mpz_longlong.os src/stdsage.os
>> src/gmp_globals.os src/ZZ_pylong.os src/ntl_wrap.os
>> -L/usr/local/src/sage/sage-5.10/local/lib
>> -L/usr/local/src/sage/sage-5.10/local/lib/python2.7/config -lntl -lpari
>> -lgmp -lpython2.7
>> Updating Cython code....
>> Compiling sage/libs/lrcalc/lrcalc.pyx because it changed.
>> Cythonizing sage/libs/lrcalc/lrcalc.pyx
>> Finished compiling Cython code (time = 10.7281630039 seconds)
>> running install
>> running build
>> running build_py
>> running build_ext
>> building 'sage.libs.lrcalc.lrcalc' extension
>> Executing 1 command (using 1 thread)
>> gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall
>> -I/usr/local/src/sage/sage-5.10/local/include/lrcalc/
>> -I/usr/local/src/sage/sage-5.10/local/include
>> -I/usr/local/src/sage/sage-5.10/local/include/csage
>> -I/usr/local/src/sage/sage-5.10/devel/sage
>> -I/usr/local/src/sage/sage-5.10/devel/sage/sage/ext
>> -I/usr/local/src/sage/sage-5.10/local/include
>> -I/usr/local/src/sage/sage-5.10/local/include/csage
>> -I/usr/local/src/sage/sage-5.10/devel/sage
>> -I/usr/local/src/sage/sage-5.10/devel/sage/sage/ext
>> -I/usr/local/src/sage/sage-5.10/local/include/python2.7 -c
>> sage/libs/lrcalc/lrcalc.c -o
>> build/temp.macosx-10.7-x86_64-2.7/sage/libs/lrcalc/lrcalc.o -w
>> gcc -bundle -undefined dynamic_lookup
>> -L/usr/local/src/sage/sage-5.10/local/lib
>> build/temp.macosx-10.7-x86_64-2.7/sage/libs/lrcalc/lrcalc.o
>> -L/usr/local/src/sage/sage-5.10/local/lib -lcsage -llrcalc -lstdc++ -lntl
>> -o build/lib.macosx-10.7-x86_64-2.7/sage/libs/lrcalc/lrcalc.so
>> Time to execute 1 command: 2.87031507492 seconds
>> Total time spent compiling C/C++ extensions: 3.05725002289 seconds.
>> running install_lib
>> copying build/lib.macosx-10.7-x86_64-2.7/sage/libs/lrcalc/lrcalc.so ->
>> /usr/local/src/sage/sage-5.10/local/lib/python2.7/site-packages/sage/libs/lrcalc
>> running install_egg_info
>> Removing
>> /usr/local/src/sage/sage-5.10/local/lib/python2.7/site-packages/sage-0.0.0-py2.7.egg-info
>> Writing
>> /usr/local/src/sage/sage-5.10/local/lib/python2.7/site-packages/sage-0.0.0-py2.7.egg-info
>>
>> real 21.433 user 6.020 sys 1.829 pcpu 36.61
>>
>> /usr/local/src/sage/sage-5.10/sage -clone combinat
>> Now cloning the current Sage library branch...
>> hg clone sage sage-combinat
>> updating to branch default
>> 2973 files updated, 0 files merged, 0 files removed, 0 files unresolved
>> Copying over all Cython auto-generated .c, .cpp and .h files...
>> Copying over hidden Cython version file...
>> Copying over build directory...
>> Copying over all auto-generated reference manual .rst files...
>> Copying over documentation output...
>> Traceback (most recent call last):
>> File "/usr/local/src/sage/sage-5.10/local/bin/sage-clone", line 101, in
>> <module>
>> shutil.copytree('sage/doc/output', branch + '/doc/output',
>> symlinks=True)
>> File "/usr/local/src/sage/sage-5.10/local/lib/python/shutil.py", line
>> 171, in copytree
>> names = os.listdir(src)
>> OSError: [Errno 2] No such file or directory: 'sage/doc/output'
>>
>> real 47.575 user 5.615 sys 3.598 pcpu 19.36
>>
>> Abort
>>
>> Does this mean that I need to build the documentation before installing
>> the combinat queue or am I doing something else wrong?
>>
>> Andrew
>>
>>
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